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6 protocols using bis acrylamide

1

Western Blot Reagent Preparation

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Ponceau S, Ammonium Persulfate and TEMED were products of Millipore-Sigma Canada. Tween20, Tris-base, Glycine, EDTA, Methanol, SDS, Acrylamide and Bis-Acrylamide were obtained from VWR, Canada. All chemicals were of ACS grade or higher.
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2

Gel Electrophoresis Protocol for Protein Analysis

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Folic Acid (FA), Ponceau S, Ammonium Persulfate and TEMED were products of Sigma-Aldrich CAN. Tween20, Tris-base, Glycine, EDTA, Methanol, SDS, Acrylamide and Bis-Acrylamide were obtained from VWR. All chemicals were of ACS grade or higher. Trimidox and Torbugesic were obtained from CDMV, Saint-Hyacinthe, CAN.
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3

Purification and Characterization of L-Asparaginase

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Culture media components such as tryptone extract and Bacto yeast extract were purchased from Difco Laboratories, India. Phenylmethylsulfonyl fluoride (PMSF), isopropyl β-D-1-thiogalactopyranoside (IPTG), acrylamide, bis-acrylamide, Tris–HCl, and L-asparagine were from Amresco, United States. Sodium dodecyl sulfate (SDS), ammonium persulfate (APS), dithiothreitol (DTT), urea, Nessler’s reagent, and trichloroacetic acid (TCA) were from Sigma-Aldrich, United States. 2,2,2-Trifluoroethanol was from SRL, India. Tetramethyl ethylenediamine (TEMED), ethylenediaminetetraacetic acid (EDTA), and bromophenol blue were from Bio-Rad, United States. Coomassie Brilliant Blue R-250 and ampicillin were from USB Corporation, United States. Glacial acetic acid and methanol were from Merck’s EMPARTA®. Ethanol, n-propanol, and glycerol were of analytical grade and were from Spectrochem, India. DEAE-Sepharose Fast Flow media was purchased from GE Healthcare, United Kingdom. BCA assay kit, SDS-PAGE prestained molecular weight marker, and commercial r-hGH were from Thermo Fisher Scientific, United States. Commercial L-asparaginase 5,000 IU/ml, Bionase® 5K, was purchased from Zydus Cadila, India. RPMI, horse serum (HS), and fetal bovine serum (FBS) were from Gibco BRL, United States. All the other chemicals were of analytical grade.
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4

Protein Modification and Characterization

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Acrylamide (AppliChem GmbH, Darmstadt, Germany); bis-Acrylamide (Amresco, Solon, OH, USA); HSA (fraction V; Renal, Budapest, Hungary); Nile Red (9-diethylamino-5H-benzo[alpha]phenoxazine-5-one (C20H18N2O2)) (Merck, Darmstadt, Germany); 1 M MgCl2 (M1028-1ML) (Sigma, St. Louis, MO, USA); NaCl, (NH4)2S2O8 (Acros Organics, Waltham, MA, USA); N,N,N′,N′-tetramethyl ethylenediamine (TEMED) (Bio-Rad Laboratories, Berkeley, CA, USA); Tris (Fisher Scientific, Pittsburgh, PA, USA); AcOH (ice-cold) and Stains-All (Acros Organics, Waltham, MA, USA); xylene cyanol (Sigma, St. Louis, MO, USA); Ficoll 400 (Pharmacia, Stockholm, Sweden); DMEM; DMEM F12; Fetal Bovine Serum (FBS); GlutaMAX Supplement; Antibiotic-Antimycotic; and TrypLE (Gibco, Waltham, MA, USA) were used in this work. The isolation and purification of the HSA monomeric fraction were performed according to [68 (link)]. HSA modified by sulfo-Cy5 dye (HSA-Cy5) was obtained according to [69 (link)]. For the solutions, Milli-Q (18.2 M × Om/cm) water (purified by Simplicity 185 water system (Millipore, St. Louis, MO, USA)) was used.
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5

Polyacrylamide Gel Electrophoresis Optimization

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Acrylamide (40% w/v) and Bis(Acrylamide) (2% w/v) solutions were bought from Amresco and used without further purification. Tetramethylethylenediamine (TEMED), ammonium persulfate (APS), and sodium acrylate were purchased from Sigma-Aldrich and used as received. Sodium polystyrenesulfonate (NaPSS) of five molecular weights (126, 234, 587, 1188, 2270 kDa) was purchased from ScientiÞc Polymers (catalog numbers 624, 625, 626, 628, and 923). The solutions were prepared using deionized water and sodium chloride. The Hydrophilic Polyvinylidene Fluoride (PVDF) filters with two pore sizes 220 and 450 nm were purchased from Millex Company.
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6

Synthesis of Tunable Polyacrylamide Hydrogels

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Acrylamide (Amresco, OH, USA) was dissolved in DI water to achieve a 40% w/v solution. Bis-Acrylamide (Amresco, OH, USA) was dissolved in DI water to achieve a 2% w/v solution. The two solutions were combined with DI water at different ratios to achieve PAM that would crosslink to different stiffnesses as described by Tse and Engler.53 (link) To crosslink 1 mL of PAM, 10 μL of 0.438 M aqueous APS and 1 μL of TEMED were added, and the mixture was either pipetted up and down multiple times or sonicated for a few seconds. The PAM solution was left to crosslink for at least half an hour. PAM gels of 3 kPa, 4 kPa, 7 kPa, 11 kPa, 20 kPa and 40 kPa Young’s moduli were synthesized.
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