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Confocal raman microscope alpha300r

Manufactured by WITec
Sourced in Germany

The Confocal Raman Microscope alpha300R is a high-performance analytical instrument designed for non-destructive, label-free imaging and spectroscopic analysis of samples. The core function of this microscope is to provide detailed chemical and structural information about the sample by utilizing Raman spectroscopy, a technique that measures the inelastic scattering of monochromatic light. The alpha300R model features a confocal optical design, which allows for high-resolution, three-dimensional imaging and analysis of the sample.

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11 protocols using confocal raman microscope alpha300r

1

Raman Spectroscopy Analysis of Micronized CFZ

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Raman spectra were acquired with a WiTec alpha300R confocal Raman microscope (WiTec, Ulm, Germany) equipped with a 532 nm solid-state sapphire excitation laser and charge coupled device (CCD) detector. For single point spectra, the laser was focused on the sample acquiring each Raman spectrum with an integration time of 75 s, using Zeiss EC EPIPLAN 50X objective (N.A. = 0.75). Alternatively, for large area scans, the laser rastered across a 100 µm by 100 µm area of the sample with a step size of 10 µm and an integration time of 2 s per pixel, using Zeiss 10 X objective. To measure quality and stability of individual CFZ microcrystals, single point spectra were taken from individual particles for micronized CFZ-HCl, micronized CFZ-HCl in diluent, and micronized CFZ free base that were dispersed on mica chips. Cosmic rays were removed from all spectra using the WiTec Project FOUR software. A MATLAB® processing algorithm developed in-house [22 (link)] was used to baseline-subtract, normalize, and overlay spectra to qualitatively identify the collected micronized sample spectra by comparing them to both CFZ-HCl and CFZ free base reference spectra.
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2

Raman Imaging of Renal Cortex

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GO deposition in the renal cortex was imaged by a WITec alpha 300 R confocal Raman microscope (WITec, Germany) with a 532 nm laser excitation source. Raman signals were acquired by a Peltier-cooled CCD (−70 °C) detector using a 600 line/mm grating spectrometer (UHTS 300, WITec, Ulm, Germany). Raman images were obtained at 0.5 × 0.5 µm2 pixel resolution at 500 ms/point integration time.
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3

Raman Imaging of FFPE Tissue Samples

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For Raman analysis, FFPE sections were deparaffinized and rehydrated as described above. No staining or further tissue preparation was needed (Supplementary Fig. 1a). Raman imaging was performed on a Witec alpha 300 R confocal Raman microscope (Witec GmbH, Ulm, Germany). Sections were scanned with a green laser (532 nm) at 50 mW laser power, an integration time of 0.05 s/pixel and at 63x objective. The scan areas were mostly 250 × 250 pixels or 300 × 300 pixels at a resolution of 1 µm per pixel. Large area scans were performed at a resolution of 10 µm per pixel. For spatial trajectories and large area scans, a topography correction was performed by true surface manual learning of 5 × 5 surface points or 3-point-plane-correction.
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4

Raman Analysis of PEP-1-1 on Silver

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WITecalpha300R confocal Raman microscope (Witec, Ulm, Germany) was used to analyze PEP-1-1. In short, 1 mg/mL of PEP-1-1 solutions was prepared, and 2 μL of it was dropped onto silver plates with a power of 20 mw and a scanning time of 20 s for analysis.
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5

Raman Spectroscopy for Microbial Identification

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Single colonies on blood agar plate were inoculated into 1 ml TSB and incubated at 35°C with 180 rpm for 16 h. Cells were washed with sterile deionized water three times and resuspended in 10 ml sterile deionized water. After washing and resuspending, 2.5 μL of cell suspension were transferred onto an aluminum-coated slide (Sonopore, China). Raman spectra were obtained using WITec Alpha300R confocal Raman microscope (WITec, Germany) with 532 nm excitations laser, 100× magnifying dry objective (NA =0.9) (Carl Zeiss, Germany), 600 gr/mm grating. The integration time per spectrum was 20 s and the power on the sample was 7-9 mW. Spectrometry was measured for single cells spanning the range of 300-1,900 cm -1 to cover the most relevant Raman peaks of microbial cells. The spectra of 5 strains were analyzed with Principal component analysis (PCA) and linear discriminant analysis (LDA) method in R software using FactoMineR package as described previously (24) .
PCA was used to compress the information held by the spectra and the first 20 principal components that described the greatest variance of the spectral data were used for LDA.
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6

SERS-based Raman Imaging of Cancer Cells

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To delineate cells with SERS-based Raman imaging, MDA-MB-231 cells (2 × 105) seeded on 2 cm × 2 cm coverslips for 24 h were incubated with HA-4-ATP-AuNFs (100 μg mL−1) for 4 h. The cells were then extensively rinsed with PBS and fixed with 4% paraformaldehyde for 20 min. Upon further rinsing with PBS, samples were observed under a Raman system (WITec Confocal Raman Microscope alpha300R). Raman images of cells were performed in StreamLine high-speed acquisition mode (50 mW, 100× objective) with 1 μm step size and 1 s exposure time. Characteristic peak of HA-4-ATP-AuNFs at 1585 cm−1 was selected for image processing.
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7

Raman Spectroscopy Analysis of Hybrid Hydrogels

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Raman spectroscopy data of pure (controls) and hybrid hydrogels were obtained with a WITec Confocal Raman microscope Alpha 300R+ (Ulm, Germany). Dried hydrogel samples were homogenized with PBS to avoid potential background fluorescence. Surface and in-depth distribution of the two different polymers inside hybrid hydrogels were determined using a frequency-doubled laser at 532 nm at an output power of 7 mW and 600 mm grating. Raman spectra for image compositions were recorded using a 100X Zeiss, EC Epiplan-Neofluar DIC objective (Oberkochen, Germany) with a numeric aperture of 0.9. Image resolution was set at 1024 × 127 active pixels, with a total of 22,500 spectra per image at a scan speed of 20 s per line and an integration time per pixel of 0.13 s. Data acquisition was driven by the WITec Control software (Ulm, Germany). Peak identification in hybrid hydrogels was recorded and compared.
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8

Comprehensive Characterization of Graphene Oxide

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The Raman, X-ray photoelectron spectroscopy (XPS), scanning electron microscopy (SEM) and atomic force microscopy (AFM) samples were prepared by drop casting and drying the diluted ethanol GO suspension onto silicon oxide wafers. Raman spectra were carried out on a WITec Confocal Raman Microscope Alpha300R with a 532 nm laser. The XPS data were recorded with Kratos Axis Ultra DLD with Mg/Al achromatic source. SEM observations were conducted with a thermal field emission scanning electron microscope (FE-SEM, model: inspect F50 equipped with an energy-dispersive X-ray spectrometry (EDS). AFM results were measured by Veeco Multimode NanoScope IIIa in contact mode. The X-ray diffraction (XRD) and elemental analysis (EA) samples were oven dried powders from the GO suspension. The XRD patterns were obtained by Bruker D2 Phaser diffractometer with a Cu-Kα X–ray (λ = 1.5418 Å) radiation. EA data were acquired using Vario EL III. The UV-visible (UV-vis) and dynamic light scattering (DLS) samples were the aqueous GO suspension solutions. The UV-vis spectra were obtained using a V-600 UV–visible spectrometer in 0.06 mg/mL. DLS were collected on N5 Submicron Particles Size Analyzer. The cyclic voltammograms (CVs) were carried out with a conventional three-electrode configuration and a CHI614D electrochemical analyzer.
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9

Raman Imaging of Biological Samples

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WITec Confocal Raman Microscope Alpha 300 R (WITec Inc., Ulm, Germany) is used to collect Raman spectra. a frequency-doubled Nd:YAG laser (Newport, Evry, France) with 532 nm wavelength and 50 mW power provided sample excitation. A 60x NIKON water immersion objective (numerical aperture of NA = 1.0.) focused laser beam on PBS immerged cells. an electron-multiplying charge-coupled device (EMCCD) camera (DU 970 N-BV353, Andor, Hartford, USA) captured the scattered signals. Using the formula rlateral = 1.22·λlaser/2·NA gives the spatial resolution of the system 325 nm. For the axial resolution, raxial = 1.4·λlaser·n/NA2 (where n is the index of refraction 1.33 for the water-based objective) gives 991 nm. WITec Image Plus software performed data acquisition and processing. Calcium fluoride (CaF2) substrate was employed due to its characteristic Raman peak at 320 cm−1 to avoid extra Raman signal interfering with cells signature. Each Raman scan contains more than twenty thousand single spectra. The recorded Raman spectra collected from each voxel (300 nm × 300 nm × 900 nm) contain the sample biochemical fingerprint under the laser spot of 1 µm.
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10

Raman Characterization of Graphene Films

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The Raman spectra and Raman maps were taken using a Witec Confocal Raman Microscope Alpha 300R using a 532 nm laser wavelength. The 25 μm × 25 μm Raman maps were constructed from 250 × 250 point spectra. The Raman maps for each deposition temperature were taken of the same region, respectively. For all integrated intensity maps, the 2D band was designated 2670–2730 cm−1, the G band was designated 1560–1600 cm−1, and the D band was designated 1325–1375 cm−1. The TS1 and TS2 peaks were designated 1860–1910 cm−1 and 2000–2050 cm−1, respectively. The peak intensity ratios, seen in Table S1, were calculated using the peak height after background subtraction. The bin size for all histograms is 0.2.
The SEM images were taken using a JEOL 7600F Analytical SEM at an acceleration voltage of 2 kV and a working distance of 3mm in order to excite secondary electrons from the graphene layers. The TEM images were taken using a double aberration corrected JEOL ARM 200F at an acceleration voltage of 80 kV to mitigate any possible beam damage. The EBSD data was taken at an acceleration voltage of 20 kV and incidence angle of 70°. The mapping of the crystalline orientation takes into account this 20° offset geometry from normal which is why the [111] index is just above the pattern shown in Fig. 4d.
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