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13 protocols using agilent 6890 series gc

1

Comprehensive Terpene and Cannabinoid Analysis

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Gas chromatography was used for the simultaneous qualitative analysis of monoterpenes, sesquiterpenes, and cannabinoids as previously reported (Hazekamp and Fischedick, 2012 (link)). An Agilent GC 6890 series (Agilent Technologies Inc., Santa Clara, CA, USA) equipped with a 7683 autosampler and a flame ionization detector (FID) was used. The instrument was equipped with a DB5 capillary column (30 m length, 0.25 mm internal diameter, film thickness 0.25 μm; J&W Scientific Inc., Folsom, CA, USA). The injector temperature was 230°C, with an injection volume of 1 μl, a split ratio of 1:20 and a carrier gas (N2) flow rate of 1.2 ml/min. The temperature gradient started at 60°C and linearly increased at a rate of 3°C/min until the final temperature of 240°C which was held for 5 min resulting in a total run time of 65 min/sample. The FID detector temperature was set to 250°C. The device was controlled by Agilent GC Chemstation software version B.04.01.
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2

Quantitative Analysis of Formaldehyde by GC-FID

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Analysis of formaldehyde was performed with an Agilent flame ionization detector (FID) (Agilent, Santa Clara, CA, United States) equipped with the Agilent GC 6890 series (Agilent, USA). The column used was an Agilent HP5 fused silica capillary column (30 m × 0.32 mm, film thickness 0.32 µm). The injector and detector temperatures were 200 °C and 250 °C, respectively. Hydrogen (7.39 psi on column) was the chosen carrier gas. The initial oven temperature was set at 40 °C, held for 3 min and increased to 130 °C after ramping at 20 °C/min. The total run time for the analysis was 7.5 min.
The 20 mL headspace vials were incubated in the headspace of an auto-sampler (Agilent G1888 headspace sampler) at 90 °C for 15 min. After equilibration, 0.2 mL of the headspace vial was pressurized into GC/FID. The loop and transfer line temperatures were set at 95 °C and 100 °C, respectively.
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3

GC-MS Analysis of Essential Oils from A. schacueriana

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Qualitative analysis of essential oils from the leaves of A. schacueriana collected at Parque Estadual da Ilha do Cardoso and Estação Ecológica da Jureia-Itatins were performed in an Agilent6890 Series GC (Agilent, Santa Clara, CA, USA) interfaced with a 5973 series quadrupole MS detector (Agilent, Santa Clara, CA, USA), equipped with a DB-5 column (30 m × 0.25 mm i.d. × 0.25 μm) (Agilent J&W, Santa Clara, CA, USA). Chromatography conditions were as follows; over temperature: initially held at 40 °C for 1 min and subsequently increased to 240 °C at 3 °C/min; carrier gas: He at a flow rate of 1 mL/min; injector and detector temperature: 250 °C, electron ionization: 70 eV. The components were identified by comparing retention indices (evaluated in relation to the retention times of a series of n-alkanes) and mass spectra with those reported in the literature [14 ,15 ].
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4

Oxidative Stress Biomarkers Measurement

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Oxidative stress assays were performed at the Advanced Research and Diagnostic laboratory, University of Minnesota. FOPs were measured using a spectrofluorometer at an excitation/emission wavelength of 360/380 nm from plasma extracted by ethanol-ether, and fluorescence measured as relative fluorescent intensity units/milliliter (FI/mL) of plasma.(40 (link)) Ox-LDL was measured from serum samples by ELISA (Mercodia, Uppsala, Sweden). Plasma F2-isoprostanes were pre-purified using thin-layer chromatography. Samples were excluded if the purification step failed, assessed using QC standards; in total 33 samples were excluded (Fig. 1). F2-isoprostane levels were assayed by GC/MS using an Agilent 6890 Series GC and an Agilent 5973N Mass Selective Detector as previously described, with modifications.(41 (link),42 (link))
QA samples were included in each assay to assess coefficients of variation (CV). Participant’s baseline and 12-month samples were included in the same batch; paired samples were randomly placed across batches. Inter- and intra-assay CVs for the analytes were 6.62% and 4.42% (FOP); 27.3% and 22.76% (ox-LDL); and 31.1% and 29.4% (F2-isoprostane).
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5

GC-MS Analysis of Essential Oils

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Essential oils were solubilized in acetone 1:100 v/v (Merck KGaA, Darmstadt, Germany). Chemical analysis of the essential oils was performed on an Agilent 6890 Series GC (Agilent, Santa Clara, CA, USA), interfaced with a 5973 Series quadrupole MS detector (Agilent, Santa Clara, CA, USA) and equipped with a DB-5MS column (30 m × 0.25 mm i.d. × 0.25 μm) (Agilent J&W, Santa Clara, CA, USA). Chromatography conditions were as follows; oven temperature program: 40 °C for 1 min with subsequent temperature increase of 3 °C/min up to 240 °C, keeping it at this temperature for 10 min.; carrier gas: He at a flow rate of 1 mL/min; injector and detector temperature of 250 °C; electron ionization: 70 eV. The component abundances were expressed as the mean ± standard deviation of the triplicates. The essential oil components were identified by comparing the retention indices (evaluated in relation to the retention times of a series of n-alkanes) and by comparison of their mass spectra with those reported in the literature [20 ,21 ].
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6

Analytical Methods for PFAAs and Volatile PFASs

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After each treatment
(Table 1), the fabrics
were analyzed for PFAAs and volatile PFASs. PFAAs were extracted and
analyzed by the method earlier developed and described by Van der
Veen et al.38 (link) In short, textile samples
of approximately 20 cm2, cut in smaller pieces, were extracted
with methanol for the determination of PFAAs with an Agilent 6410
Triple Quad liquid chromatography-tandem mass spectrometer (LC-MS/MS,
Agilent Technologies, Amstelveen, The Netherlands) in the electrospray
negative ionization mode. For extraction and analysis of the volatile
PFASs, the method described by Van der Veen et al.27 (link) was used. In short, textile samples of approximately 20
cm2 were extracted with ethyl acetate. After cleaning the
extracts with Envi-carb and a concentrating step, the extracts were
analyzed with gas chromatography/electron impact-mass spectrometry
(GC/EI-MS) on an Agilent 6890 series GC coupled to a 5973 Network
MS (Agilent Technologies, Amstelveen, The Netherlands).
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7

GC-FID Analysis of Saturate and Aromatic Fractions

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The
isolated saturate
and aromatic fractions were analyzed, respectively, using an Agilent
6890 series GC with a splitless capillary injector and a 30 m ×
0.25 mm (i.d.) J&W Scientific DB-5 122-5032 fused silica capillary
column coated with a 0.25 μm liquid film. The injector was set
up in the splitless injection mode, and the temperature was held at
300 °C. The carrier gas was helium (He) with a flow rate of 1.4
mL/min. The temperature program started with an initial temperature
of 40 °C, held for 1.5 min, and increased to 300 °C at a
rate of 4 °C per minute followed by an isothermal period of 34
min for a total run time of 100.5 min. The flame ionization detector
temperature was set at 310 °C. n-Alkanes and
isoprenoids were identified in each chromatogram by comparing their
relative retention times with standards.
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8

Measuring Nitrogen Compounds in Wastewater

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Liquid samples (1 ml) were collected from the influent and effluent of each reactor every 2–3 days, and were pelleted by centrifugation for 5 min at 16,000 × g. The supernatants were stored at −20 °C until further analyses. Nitrite concentrations were determined colorimetrically at 540 nm after a 20 min reaction of 1 ml sample with 1 ml 1% sulfanilic acid in 1 M HCl and 1 ml 0.1% N-naphtylethylenediamine23 (link). Ammonium concentrations were determined colorimetrically at 420 nm after a 30 min reaction of 40 µl sample with 760 µl 0.54% ortho-phthalaldehyde, 0.05% β-mercaptanol, and 10% ethanol in 400 mM potassium phosphate buffer (pH 7.3)23 (link). The nitrate concentrations were determined by a Sievers Nitric Oxide Analyzer 280i (Analytix Ltd, UK) according to the manufacturer’s instructions. The gas inlet and outlet of reactors II and III were connected to an Eco Physics CLD700 EL chemiluminescence NOx analyzer (EcoPhysics, Switzerland) every 3–4 days to measure the concentration of NO. N2O was measured at least once a week with an Agilent 6890 Series GC (Agilent Technologies, USA) equipped with a Porapak Q column and an electron capture detector (ECD).
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9

GC-FID Analysis of HCHs

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An Agilent 6890 series GC (Agilent
Technologies, USA) equipped with a flame ionization detector (FID)
was used to determine the concentration of HCHs throughout the study.
Further analytical details are documented in S3 (SI).
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10

Analytical Methods for SCFA and Ammonia

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Short chain fatty acid analysis was conducted according to a previously described method [43 (link)]. Samples were thawed, prepared by vacuum distillation, and analysed by gas chromatography (Agilent 6890 Series GC, Agilent Technologies, Wilmington, DE, USA), using a fused silica column (J&W Scientific, supplied by Agilent) with a 1 µm coating. Helium was the carrier gas (flow rate of 6 mL/min). Split injector and FID detector were held at 250 °C. The oven was held at 90 °C for 1 min, then ramped to 190 °C (rate of 10 °C/min) and held for 1 min. SCFA values were corrected to mmoles per gram DM weighed into the serum bottles prior to inoculation.
Ammonium analysis was carried out using a modified colorimetric method [44 (link)]. The method is based on the chemical reaction of NH4+ ions with sodium salicylate and nitroprusside in a weakly alkaline buffer, at a wavelength of 650 nm, using a UV/visible spectrophotometer (Automated Discrete Analyser Model AQ2+, SEAL Analytical Ltd., Fareham, UK).
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