The largest database of trusted experimental protocols

10 protocols using polyamine

1

Pollen Tube Growth Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Pollen was cultured in the liquid medium for 30 min and after the pollen was hydrated, 25 μg ml−1 self- or non-self-S-RNase was added. The polyamines (Sigma, Burlington, MA, USA) were dissolved by ddH2O to 2 mmol/L, then the polyamine solution added to the pollen medium to a final concentration of 0.005 mmol/L, 0.025 mmol/L, 0.05 mmol/L, 0.25 mmol/L, 0.5 mmol/L, 1 mmol/L, and the polyamines mixed gently. Pictures were taken and the length of the pollen tube was measured after 90 min incubation.
+ Open protocol
+ Expand
2

Polyamines Influence on 3T3-L1 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
The 3T3-L1 cells were plated in 96-well plates at a density of 1.5 × 104 cells/well and incubated at 37 °C. One day after plating, the cells were treated with a culture medium containing 10, 100, and 1000 µM polyamines (Sigma-Aldrich Japan, Tokyo, Japan). polyamines were added with 1 mM aminoguanidine (Sigma-Aldrich Japan). After 24 h, 10 µL/well WST-1 regents (Roche Diagnostics K.K., Tokyo, Japan) were added to the cells prior to incubation for 1 h. Formazan dye transformation was quantitated by measuring the absorbance at 440 nm using a Spectra Max M2e microplate reader (Molecular Devices, Tokyo, Japan).
+ Open protocol
+ Expand
3

Amino Acid-Specific Cell Culture Media

Check if the same lab product or an alternative is used in the 5 most similar protocols
Physiological medium and arginine-free medium consisted of an amino acid-free DMEM (modified E15-810, custom-made GE Healthcare) supplemented with 5% FBS and physiological amino acid (1× PAA) concentrations or cell culture amino acid (except for arginine) concentrations, respectively, pH adjusted to 7.4, as listed in Table 1. Cell culture tested amino acids, polyamines and urea (Sigma-Aldrich) were dissolved in Hanks' buffered salt solution (HBSS; GE Healthcare) in stock solutions of 10, 50 or 100 mM.
+ Open protocol
+ Expand
4

Polyamine Modulation in Viral Infection

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were seeded with fresh medium with 2% serum for all drug treatments. Following overnight attachment, cells were treated and incubated at 37°C for times indicated below. Difluoromethylornithine (DFMO; TargetMol) was diluted to a 100-mM solution in sterile water and stored at 4°C. For DFMO, cells were treated and incubated for 96 h at 1 mM. N11-Diethylnorspermine (DENSpm; Santa Cruz Biotechnology) was diluted to 10 mM in sterile water and stored at 4°C. For DENSpm, cells were treated and incubated for 24 h at 100 mM. GC7 (Cayman Chemical) was diluted to a 100-mM solution in sterile water and stored at −20°C. For GC7, cells were treated for 24 h at 500 mM along with 500 μM aminoguanidine (Sigma-Aldrich). Ribavirin (VWR) was diluted to 100 mM in sterile water and stored at −20°C. For Ribavirin, cells were treated and incubated for 4 h at 400 mM. Polyamines (Sigma-Aldrich) were added to cells at the time of infection at 10 mM unless otherwise indicated. For infections, all drug treatments were performed at the time of infection unless otherwise indicated. For persistently infected experiments, drugs were continually supplemented onto cells with fresh medium with 2% serum upon collection of viral supernatants.
+ Open protocol
+ Expand
5

Polyamine modulation of DFMO and cyclodextrin effects

Check if the same lab product or an alternative is used in the 5 most similar protocols
Difluoromethylornithine (DFMO; TargetMol) was diluted to 100 mM in water. Methyl-β-cyclodextran (MβCD, Cayman Chemical) was diluted to 100 mM in dimethyl sulfoxide (DMSO, Sigma-Aldrich). U18666A (Cayman Chemical) was diluted to 20 mM in DMSO (Sigma-Aldrich). U18666A treatment was maintained throughout infection (unless otherwise stated), and MβCD was removed from cells after 4 h of treatment. Cells were seeded with a fresh medium with 2% serum and attached overnight. For DFMO, cells were treated and incubated for 96 h. During infection, media was cleared and saved from the cells. The same medium was used to replenish cells following infection. For MβCD treatment on cells, the drug was added and incubated for 4 h. For MβCD treatment on the virus, the drug was directly incubated with the virus for 4 h at 25°C. For U18666A, cells were treated and incubated for 24 h. Polyamines (Sigma-Aldrich) were added to the cells at the time of infection.
+ Open protocol
+ Expand
6

Multicomponent Biomolecular Characterization

Check if the same lab product or an alternative is used in the 5 most similar protocols
Poly‐l‐lysine (Br; mean DP by viscometry 115), poly‐l‐arginine (Cl; DP 61), poly‐l‐histidine (Cl; DP 106), poly‐l‐glutamate (Na+; DP 240), boric acid, lead nitrate, l‐ascorbic acid, dehydro‐l‐ascorbic acid, sugars, alditols, myo‐inositol, polyamines, l‐lysine and buffer components were all from Sigma–Aldrich (Dorset, UK).
+ Open protocol
+ Expand
7

Bacterial Strain Cultivation and Dendrimer Synthesis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Bacterial strains and plasmids used in this study are shown in Table 6. The primers used for qPCR analyses and construction of gene knockouts are listed in Table S3. P. aeruginosa and Escherichia coli strains were grown in lysogeny broth (LB) at 37°C with agitation (250 rpm). E. coli strain DH10B was used as a host for cloning experiments.
Dendrimers were synthesized and purified as described (19 (link), 42 (link)). Polymyxin-B, polyamines, and chemicals were purchased from Merck-Sigma (Switzerland).
+ Open protocol
+ Expand
8

Seedling Growth Conditions Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
The seeds were sterilized by washing them with 95% ethanol. Except where noted in the text, they were plated on half-strength buffered Linsmaier and Skoog medium containing micro- and macronutrients, vitamins, and 1.5% sucrose (Caisson Laboratories, North Logan, UT, USA) that was supplemented with 1.5% agar type E (Sigma-Aldrich, St. Louis, MO, USA) and polyamines (Sigma-Aldrich) as required. The seedlings were stratified for 2–8 d and grown in either a Conviron TC16 growth chamber or an Enconair (now BioChambers, Winnipeg, Manitoba, Canada) Controller 6000 growth chamber for each experiment. Both chambers were set at 22 °C and a 16h light/8h dark cycle, and the light intensity was 50–70 μmol m–2 s–1 and provided by cool-white fluorescent bulbs (Grainger, Lake Forest, IL, USA).
+ Open protocol
+ Expand
9

Polyamine Depletion by DFMO

Check if the same lab product or an alternative is used in the 5 most similar protocols
Difluoromethylornithine (DFMO; TargetMol) was diluted to 100 mM solution in sterile PBS. For DFMO treatments, cells were trypsinized (Zymo Research) and reseeded with fresh medium supplemented with 2% FBS. Cells were treated with 1 mM DFMO unless otherwise indicated. Cells were incubated with DFMO for 96 hours to allow for depletion of polyamines. Experiments involving polyamine rescues were performed using 1 μM polyamines (Sigma-Aldrich) added to either the cell supernatant or viral inoculum as indicated.
+ Open protocol
+ Expand
10

ROCK Inhibitor and CEPT Cocktail Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
ROCK inhibitor Y-27632 (Tocris, 10 µM, unless otherwise stated) and CEPT cocktail components (Chroman 1, MedChemExpress, 50 nM; Emricasan, Selleckchem 5 µM; Polyamine, Sigma Aldrich, 1:1000; trans-ISRIB, Tocris, 7 µM) were prepared following the manufacturer's recommendations.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!