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12 protocols using dulbecco modified eagle medium (dmem)

1

Skin Tissue Cultures from Healthy Women

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Skin organ cultures were prepared from tissue samples derived from abdominal or breast tissues of healthy women (30–40 years old) undergoing routine therapeutic procedures, with the donor’s consent. Samples were collected by ALPHENYX (Marseille, France). ALPHENYX possesses the required accreditations from the French Ministry of High Education and Research, in addition to the Committee of Persons Protection under the authorization numbers AC-2014-2141 and DC-2014-2147.
Microdissected human skin was cultured at 37 °C under 5% CO2, in DMEM (Dutscher, Brumath, France, #L0060-500) plus 10% FBS (Sigma Aldrich, #F7524), 1% Penicillin/Streptomycin (Sigma Aldrich, St. Louis, MO, USA, #P0781-100), and 1% of minimum medium non-essential amino acids 10X (ThermoFisher, Waltham, MA, USA), #11140-035).
NHEKs cells were isolated from human skin epidermis and cultured in KGM2 Medium (Promocell, Heidelberg, Germany), #C-20011) with 1% Penicillin/Streptomycin (Sigma Aldrich, #P0781-100) at 37 °C under 5% CO2 and 95% relative humidity. The detailed protocols are described in the supplementary materials.
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2

Studying S. aureus Interaction with Endothelial Cells

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To study S. aureus interaction with endothelial cells we used the EA.hy926 cell line (ATCC® CRL-2922™), originally derived from human umbilical vein. EA.hy926 cells were grown in Dulbecco's modified Eagle high glucose medium (DMEM, Dominique Dutscher™) supplemented with 10% fetal bovine serum (FBS, Eurobio™). Culture media contained 1% penicillin/streptomycin and 1% amphotericin B. Antibiotics were removed from culture medium prior to infection.
The human monocytic cell line THP-1 (ATCC® TIB-202™) was grown in Roswell Park Memorial Institute medium (RPMI-1640) supplemented with 5% FBS. Two days before infection, phorbol myristate acetate 200 ng mL−1 (PMA) was added to the culture medium to induce monocytes differentiation into macrophages.
All cells were incubated in a humidified 5% CO2 atmosphere at 37°C.
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3

Isolation and Characterization of Influenza D and Mycoplasma bovis

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The influenza D virus strain D/bovine/France/5920/2014 was isolated from the lung of a dead calf with clinical signs of BRD (9 ). The virus was propagated on human rectal tumor cells (ATCC CRL-11663) in Dulbecco’s modified Eagle’s medium (DMEM; Dutscher, France) supplemented with 1 μg/ml TPCK (tosylsulfonyl phenylalanyl chloromethyl ketone)-trypsin (Thermo Fisher Scientific, MA, USA) at 37°C, 5% CO2 for 5 days. Viral titer was determined on swine testis cells (ATCC CRL-1746) using the 50% tissue culture infective dose (TCID50) method as previously described (17 (link)).
M. bovis strain RM16 was isolated in 2016 in France from a pool of transtracheal aspiration samples from 3 heifers with clinical signs of respiratory infection (48 (link)). Mycoplasma cells were grown in SP4 medium (49 ) supplemented with cephalexin (500 μg/ml). After 24 to 36 h of incubation at 37°C, mycoplasma cultures were stored at −80°C. Mycoplasma titers were determined by serial dilutions in Dulbecco’s phosphate-buffered saline (PBS; Invitrogen) supplemented with 1% heat-inactivated horse serum (Invitrogen). Dilutions were spotted (10 μl) onto solid SP4 medium, and CFU were counted after 2 to 5 days of incubation at 37°C. For animal inoculations, mycoplasma cells were washed twice in DMEM by 20 min of centrifugation at 9,000 × g and kept on ice. Prior to inoculation, 1010 CFU were diluted in 10 ml DMEM.
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4

Isolation and Characterization of Human Mesenchymal Stem Cells

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HMADS cells used as human MSC model were isolated from adipose tissues obtained from young donors after informed parental consent as previously reported.44 (link) The human fetal ventricular RL14 cell line and primary HUVEC were purchased from the American Type Cell Culture (ATCC, LGC Standards S.a.r.l. Molsheim France) and PromoCell (Heidelberg, Germany), respectively.
HMADS cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM), 1 g/l glucose, containing 10% heat-inactivated fetal bovine serum (FBS; Dominique Dutscher, Issy Les moulineaux, France), 100 U/ml penicillin, 100 μg/ml streptomycin and 10 mM HEPES (Invitrogen, Carlsbad, CA, USA). As described earlier,44 (link) HMADS cells exhibited the following phenotype: CD44+, CD49b+, CD105+, CD90+, CD13+, Stro-1, CD34, CD15, CD117, Flk-1, Gly-A, CD133, HLA-DR and HLA-Ilow.
Human RL14 cells were grown in DMEM/F-12 (Life Technologies, Carlsbard, CA, USA) supplemented with 12.5% heat-inactivated FBS, 100 U/ml penicillin, 100 μg/ml streptomycin and 10 mM HEPES.45 (link) HUVEC cells were expanded on gelatin (2%)-coated dishes with the growth medium recommended and commercialized by the manufacturer (PromoCell). All cell types were maintained in a 5% CO2 atmosphere at 37 °C.
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5

Cell Culture Conditions for HEK293T and Vero

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Human embryonic kidney cell line HEK293T (ATCC) and the kidney epithelial cell line Vero (ATCC) were grown in Dulbecco’s modified Eagle’s medium (DMEM, Dutscher, Issy-les-Moulineaux, France) or modified Eagle’s medium (MEM, Dutscher) supplemented with 10% fetal bovine serum heat inactivated (FBS, Dutscher) and completed with 2 mmol.L-1l-glutamine (Dutscher), 100 U.mL-1–0.1 mg.mL-1 penicillin-streptomycin (Dutscher), 1 mmol.L-1 sodium pyruvate (Dutscher) and 250 μg.mL-1 amphotericin (Dutscher). Cells were maintained in a humidified atmosphere of 5% CO2 at 37°C in Petri dishes.
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6

Isolation and Characterization of Influenza D and Mycoplasma bovis

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The influenza D virus strain D/bovine/France/5920/2014 was isolated from the lung of a dead calf with clinical signs of BRD (9 ). The virus was propagated on human rectal tumor cells (ATCC CRL-11663) in Dulbecco’s modified Eagle’s medium (DMEM; Dutscher, France) supplemented with 1 μg/ml TPCK (tosylsulfonyl phenylalanyl chloromethyl ketone)-trypsin (Thermo Fisher Scientific, MA, USA) at 37°C, 5% CO2 for 5 days. Viral titer was determined on swine testis cells (ATCC CRL-1746) using the 50% tissue culture infective dose (TCID50) method as previously described (17 (link)).
M. bovis strain RM16 was isolated in 2016 in France from a pool of transtracheal aspiration samples from 3 heifers with clinical signs of respiratory infection (48 (link)). Mycoplasma cells were grown in SP4 medium (49 ) supplemented with cephalexin (500 μg/ml). After 24 to 36 h of incubation at 37°C, mycoplasma cultures were stored at −80°C. Mycoplasma titers were determined by serial dilutions in Dulbecco’s phosphate-buffered saline (PBS; Invitrogen) supplemented with 1% heat-inactivated horse serum (Invitrogen). Dilutions were spotted (10 μl) onto solid SP4 medium, and CFU were counted after 2 to 5 days of incubation at 37°C. For animal inoculations, mycoplasma cells were washed twice in DMEM by 20 min of centrifugation at 9,000 × g and kept on ice. Prior to inoculation, 1010 CFU were diluted in 10 ml DMEM.
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7

Isolation and Culture of Human Synoviocytes

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Human synoviocytes were recovered from the synovial membrane of six patients undergoing hip replacement surgery (mean age = 75 years). The cells were released by enzymatic digestion of the synovial membrane with collagenase type I (2 mg/ml, 12 h; ThermoFisher, Waltham, USA). The cells were cultured in Dulbecco’s Modified Eagle Medium high glucose with glutamine and sodium pyruvate (DMEM, Dutscher), supplemented with 10% Foetal Bovine Serum (FBS, Dutscher) and penicillin-streptomycin (Lonza), then incubated at 37 °C in a humid atmosphere containing 5% CO2.
To achieve the desired number of cells, passages were performed. The cells were rinsed with DPBS, then detached with 0.05% trypsin (ThermoFisher). The cells were recovered in a culture medium and seeded at approximately 7500 cells/cm2. The absence of mycoplasmas was checked by PCR.
The cells were processed at the confluence stage. Treatments were diluted in a new culture medium to the desired concentration. Each molecule was tested alone or in the presence of LPS. The three molecules were also tested together in order to see the effects of the combination of these three extracts, in the presence and absence of LPS.
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8

Comparative Analysis of U-87 MG and F98 Cell Lines

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U-87 MG and F98 cell lines from ATCC were used. The U87 cell line was established from a human glioblastoma. The cells are often polynuclear with very fine membrane extensions. Their mean doubling time is 30.8 ± 2.5 [42 (link)]. The F98 cell line is a murine glioma. The cells are predominantly spindle-shaped and have an in vitro doubling time of approximately 18 h [43 (link)]. Both cell lines were cultured in the same conditions in plastic flasks. The culture medium was composed of DMEM with 4.5% glucose supplemented with 10% fetal bovine serum and 2 mM glutamine (Dutscher, Bernolsheim, France). The cells were maintained at 37 °C in a humid atmosphere with 5% CO 2 . For the experiments, cells were seeded at a concentration of 1000 cells/well in 96-well flat CleaLine® plates for 2D monolayer cultures or in 96-well CELLSTAR® round-bottom ultra-low attachment plates for 3D spheroid cultures.
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9

Culturing HEK293T and Macrophages

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HEK239T cells stored at −80 °C were thawed for 1 min at 37 °C followed by culture in Dulbecco’s modified Eagle’s medium (DMEM; GIBCO) with 10% fetal bovine serum, 100 mg/mL streptomycin, and 100 IU/mL penicillin at 37 °C in 5% CO2.
Macrophages were cultured at 37 °C in DMEM with 4 mM l-glutamine (Dutscher) supplemented with 10% heat-inactivated fetal calf serum (Dutscher) and Hepes 10 mM (Dutscher), in a 5% CO2 atmosphere.
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10

Murine Cancer Models: Subcutaneous Implantation

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CT26 American Type Culture Collection (ATCC) murine colon cancer cells (USA) were cultured in RPMI 1640 (Dutscher, France) + 10% fetal calf serum (Dutscher, France) (37 °C, 5% carbon dioxide and 95% humidity). B16-F10 murine melanoma cancer cells (USA) were cultured in DMEM (Dutscher, France) + L-Glutamine + red phenol + glucose (4.5 g/l) + 10% fetal calf serum (Dutscher, France) (37 °C, 5% carbon dioxide and 95% humidity).
The day before mice were injected with cancer cells. These cells were contacted with trypsin and diluted to ½. The unit injection included 5 × 105 CT26 cells in 100 μl of NaCl, or 1 × 106 B16-F10 cells 100 μl of NaCl, in performed subcutaneously on the right flank of immunocompetent BALB/c female and C57BL female mice and 8-week immunosuppressed athymic BALB/c nude mice (Charles River Laboratories, Saint-Germain-des-Monts, France). During the entire duration of the experiment, mice were housed in our approved animal facility (Centre Georges-François Leclerc, Dijon, FRANCE). The mice were sacrificed by cervical dislocation after Isoflurane 2.5% anesthesia as soon as a limit point was reached (Tumoral Volume (TV) ≥1500 mm3, pain, significant necrosis).
Before experimentation, the small animal ethics committee and the Ministry of Higher Education and Research validated the project.
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