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5 protocols using r0531

1

Cell Culture and Transfection Protocols

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293T, SW480 and NCM460 cells were cultured in Dulbecco's modified Eagle's medium (DMEM, SH30022.01, Hyclone, China), whereas LoVo, RKO, DLD-1 and HCT116 cells were cultured in Roswell Park Memorial Institute Medium 1640 (RPMI 1640, SH30809.01, Hyclone) supplemented with 10% fetal bovine serum (04-001, Biological Industries, Israel) and antibiotics (100 U/mL penicillin and 100 mg/mL streptomycin, and SV30010, Hyclone), in a humidified atmosphere containing 5% CO2 at 37 °C (normal culture conditions). Cell transfections were carried out by using Lipofectamine 2000 (11668019, Invitrogen, USA) or R0531 (Thermo Fisher Scientific, USA) according to the manufacturer's instructions.
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2

Luciferase Assay for Gene Expression

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For luciferase assays, 2 × 104 cells/well were seeded in 48-well plate and transfected with the pmirGLO-Rab25-WT, pmirGLO-Rab25-MUT and a negative control using transfection reagent (R0531, Thermo, USA). At 48 h post-transfection, cells were lysed and luciferase activity was examined using the dual-luciferase reporter assay system (E1910, Promega, USA) according to the manufacturers’ instructions. All experiments were performed in triplicate and the results were expressed as firefly luciferase activity normalized to Renilla luciferase activity.
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3

Regulation of circINSR and miR-15/16 family

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The second exon sequence of the INSR gene was inserted into the pCD2.1 vector (Geneseed Biotech, Guangzhou, China) and psi-CHECK2 vector (Promega, Fitchburg, WI, USA). Small interfering RNA (siRNA) oligonucleotides were designed to combine with the back-splice region of circINSR (RiboBio, Guangzhou, China). These siRNAs inhibited the expression of circINSR after transfection into the cell and was named si-circINSR. The mimics of bta-miR-15a, bta-miR-15b, bta-miR-16a, and bta-miR-16b were purchased from RiboBio (Guangzhou, China). The 3′-untranslated regions (UTRs) of the cyclin D1 (CCND1) and B-cell lymphoma 2 (Bcl-2) genes containing the miR-15/16 binding sites were amplified using the PCR enzyme mix (Platinum II Taq Hot-Start DNA Polymerase, Invitrogen). The wild-type and mutant 3'-UTR gene sequences were cloned into the psi-CHECK2 vector. The Renilla: Firefly ratio was measured and compared against that for the non-treated control. The mimics (50 nM) or vectors (2 μg/mL) were transfected into cells using a transfection reagent (R0531, Thermo Fisher Scientific, USA). For the overexpression of the miR-15/16 family, the miR-15a, miR-15b, miR-16a, and miR-16b mimics were mixed in equal amounts for transfection.
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4

Overexpression of circHUWE1 and miR-29b

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To overexpress circHUWE1 and miR-29b, the full-length cDNA of circHUWE1 or the primary (pri)-miR-29b fragment were separately cloned into the pcD2.1 vector (Geneseed, China) and the pcDNA3.1(+) vector (Invitrogen, USA), respectively. The siRNAs to target circHUWE1 and miR-29b inhibitors were synthesized by RiboBio (Guangzhou; China) to knock down circHUWE1 and miR-29b. The circHUWE1 full-length sequence with mutational sites pairing to the miR-29b seed region was also amplified using overlap PCR, and was then inserted into the pcD2.1 vector to construct the pcD2.1-circHUWE1-mut vector. Here, all vectors were verified by sequencing, and transfections were conducted with R0531 (Thermo Fisher Scientific, USA) according to the manufacturer’s instructions.
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5

Protein Extraction from Murine Myocytes

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Murine myocytes (C2C12) and HeLa cells were grown in low glucose medium (1 g/L glucose D-6046, Sigma Aldrich) supplied with FBS 10% (F-0804, Sigma Aldrich) and penicillin and streptomycin (P-4333, Sigma Aldrich) and when occurred, C2C12 cells were grown in high glucose medium (4.5 g/L glucose D-5671). For transfection, 40%–50% confluent cells were transfected with the according plasmids using lipofectamine (R-0531, TurboFect transfection Reagents, Thermo Fischer Scientific). Cells were harvested after 24 h by centrifugation (3000 RPM for 10 min at 4°C) and washed with cold phosphate buffered saline (PBS) containing 0.2 M iodoacetamide. The soluble protein fractions were extracted with RIPA buffer (25 mM Tris-Cl pH 7.5, 50 mM NaCl, 0.5% NP40, 1 mM EDTA pH 8.5, 1 mM DTT, 20 mM NEM, protease inhibitors) and passed through a syringe 2–3 times. Crude lysates were clarified by centrifugation (11000 g for 15 min at 4°C) and protein concentration were measured and separate with SDS-PAGE gel after denaturation in presence of loading buffer.
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