Samples of 100–200 μl blood were collected into tubes containing EDTA, lysed in ACK buffer and centrifuged. The pellet was resuspended in PBS and used for staining. Spleen cell suspensions were prepared by mechanical dissociation in PBS using 40 μm strainers. BM cells were prepared by flushing femurs with PBS. Spleen and BM preparations were treated with ACK buffer to lyse RBCs. Cell suspensions from the lamina propria of the small intestine were prepared by mechanical dissociation followed by enzymatic digestion using DNAse and Liberase. Cells were then purified using a 40/60% Percoll gradient and isolated at the interphase. Cells were counted using a Scepter counter (Millipore) or by flow cytometry using CountBright absolute counting beads (Thermo Fisher).
Scepter counter
The Scepter counter is a compact, handheld instrument used for automated cell counting and sizing. It provides accurate and reliable measurements of cell concentration and size distribution in a variety of cell samples.
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Isolation and Purification of Immune Cells
Samples of 100–200 μl blood were collected into tubes containing EDTA, lysed in ACK buffer and centrifuged. The pellet was resuspended in PBS and used for staining. Spleen cell suspensions were prepared by mechanical dissociation in PBS using 40 μm strainers. BM cells were prepared by flushing femurs with PBS. Spleen and BM preparations were treated with ACK buffer to lyse RBCs. Cell suspensions from the lamina propria of the small intestine were prepared by mechanical dissociation followed by enzymatic digestion using DNAse and Liberase. Cells were then purified using a 40/60% Percoll gradient and isolated at the interphase. Cells were counted using a Scepter counter (Millipore) or by flow cytometry using CountBright absolute counting beads (Thermo Fisher).
Flow Cytometric Characterization of iPSCs
Example 18
Flow cytometry was conducted using a Guava EasyCyte HT. Cells were dissociated using Trypsin Like Enzyme (Tryp-LE) for 10 minutes at 37° C. Dissociated cells were pipetted to remove aggregations and clumps and passed through a 70-micron filter. Single cell suspensions were counted using a Millipore Scepter counter and cell density was adjusted to 1×105 cells/100 microliters. 5 microliters of appropriate antibody was added to the dissociated cells and mixed using gentle pipetting. This was then incubated in the dark for 30 minutes on ice. At the end of this incubation period, labeled cells were washed with 1× ice cold DPBS and resuspended in 200 microliters DPBS. Cells were then counted using a Guava EasyCyte HT. Viable cells were gated using a log/log Forward Scatter/Side Scatter plot. Each IPSC marker fluorescence was also compared to its IgKappa Isotype control to quantify non-specific and autofluorescence events. Each IPSC marker was counted and plotted as a graph with the abscissa containing the log Fluorescence of a given marker and the ordinate containing the counts of either a negative or positive viable gated cell. This graph was then used to create histograms providing percentages of negative and positive cells. Based on the IgKappa Isotype control, 102 was used as the cutoff in log Fluorescence between a negative and a positive cell.
Proliferation and Cytotoxicity Assays
IFN-γ Production in BSL-4 Leukocytes
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