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19 protocols using rabbit anti mouse igg

1

Western Blot Analysis of Mitochondrial Proteins

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10µg samples of forebrain mitochondrial protein obtained from animals immediately following 1-hour exposure were subjected to SDS-acrylamide gel electrophoresis and immunoblotting. Blots were labeled with a primary polyclonal antibody to mouse CcOX I (Molecular Probes, Eugene, Oregon, USA), rabbit monoclonal anti-human BCL-xL antibody (Cell Signaling Technology, Beverly, MA), or rabbit polyclonal anti-human BCL-2 antibody (GeneTex Inc., Irvine, California, USA). Blots were secondarily exposed to rabbit anti-mouse IgG (Santa Cruz Biotechnology Inc., Santa Cruz, California) for CcOX I or goat anti-rabbit IgG (Cell Signaling Technology, Beverly, MA) for BCL-xL and BCL-2. Mitochondrial protein loading was assessed with a primary monoclonal antibody to mouse VDAC (Molecular Probes, Eugene, Oregon, USA) and secondarily exposed to rabbit anti-mouse IgG (Santa Cruz Biotechnology Inc., Santa Cruz, California.). The signal was detected with enhanced chemiluminescence (ECL; Amersham Pharmacia Biotech, Piscataway, New Jersey, USA), and density was measured using scanning densitometry. Three animals per group per experiment were evaluated.
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2

Yeast Total Extract Preparation

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Yeast total extracts were prepared as previously described (Knop et al., 1999 (link)). 1.5 × 108 cells from OD600 = 0.4–0.6 cultures were resuspended in 1150 µl lysis buffer (0.24 M NaOH, 1% β-mercaptoethanol, 1 mM EDTA, 1 mM PMSF, 5 µM Pepstatin A, 10 µM Leupeptin). After incubation on ice for 20 min, 150 µl 55% trichloroacetic acid (TCA) was added to precipitate proteins on ice for 20 min. The mixture was centrifuged at 16100 rpm at 4°C for 10 min. The pellet was resuspened in 250 µl HU buffer (8 M urea, 5% SDS, 200 mM Tris-HCl [pH 6.8], 1 mM EDTA, 5% β-mercaptoethanol, and 1% bromophenol blue) and incubated at 65°C for 10 min, followed by 16100 rpm centrifugation at RT for 5 min. The supernatant was used for subsequent analyses. Immunoblotting was performed with primary antibodies: rabbit-anti-GFP (1:2000) (Abcam), and mouse-anti-PGK1 (1:1000) (Abcam). Mouse-anti-rabbit-IgG (1:10,000) (Santa Cruz) and goat-anti-mouse-IgG (1:10,000) (Santa Cruz) were used as secondary antibodies.
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3

Protein Expression and Apoptosis Analysis

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Cells (2×106) were harvested and washed twice in ice-cold PBS, then lysed in 100 μl of RIPA Lysis and Extraction Buffer at 4°C for 60 min. The lysates were centrifuged (13,000 rpm) and acquired total protein. Protein concentration was determined with Bradford protein assay, and 20 μg of proteins were loaded onto 10% SDS/PAGE gel using an electrophoresis gel-running system. The gels were transferred to PVDF membranes using a trans-blot system. Blot membranes were blocked with 5% skim milk for 1 h, reacted with appropriate primary antibodies overnight, and washed 5 times in PBS. Secondary antibodies were reacted for 1 h and the blot was detected using SuperSignal West Femto enhanced chemiluminescence substrate and the Alpha Imager HP (Alpha Innotech, Santa Clara, CA, USA). Primary and secondary antibodies were used as below; antibodies against the cleaved form of caspase-3, Beclin-1, and PARP were purchased from Cell Signaling Technology (Beverly, MA, USA). LC3 and p62/SQSTM1 (Sigma) were also used. ATG5 and mouse anti-β-actin antibody were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA), as were mouse anti-rabbit IgG and rabbit anti-mouse IgG antibodies.
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4

MTT Assay and Immunoblotting Protocol

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3-(4,5-Dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide (MTT) was purchased from Sigma (St. Louis, MO, USA). 3-Methyladenine (3-MA, a class III PI3K inhibitor) was obtained from Calbiochem (La Jolla, CA, USA). Antibodies against collagen type I, bone morphogenic protein (BMP)-2, osterix, and transforming growth factor-beta (TGF-β1) were purchased from Abcam (Cambridge, UK). The GAPDH, mouse anti-rabbit IgG, and rabbit anti-mouse IgG antibodies were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). All other chemicals and reagents were purchased from Sigma unless otherwise specified.
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5

Western Blot Analysis of SULT2B1b in Intestinal Tissue

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Total cell lysates were prepared and separated using sodium dodecyl-sulfate polyacrylamide gel electrophoresis (SDS-PAGE), as previously described (30 (link)). Briefly, intestinal tissues were homogenized in a 1.5-mL tube containing 250 μL of 1× cell lysis buffer (#9803; CST, Danvers, MS, USA) supplemented with a cocktail of complete protease inhibitors (Roche, Basel, Switzerland) using an electric homogenizer for 1 min on ice. After centrifugation, supernatants were mixed with an equal volume of 2× sample buffer [125 mM Tris-HCl, 0.01% bromophenol blue, 4% SDS, 20% glycerol, and 200 mM dithiothreitol (DTT)] and boiled for 10 min. Total protein concentration was measured using the DC™ Protein Assay Reagent (Bio-Rad, Hercules, CA, USA). Tissue extracts were separated using SDS-PAGE and immunoblotted with the following antibodies: rabbit anti-SULT2B1b [custom-made (26 (link)); 1:1,000], and goat anti-β-actin (#sc-1616; 1:2,000, Santa Cruz Biotechnology, TX, USA). The following horseradish peroxidase-conjugated secondary antibodies were used: mouse anti-rabbit IgG (#sc-2357; 1:2,000, Santa Cruz Biotechnology), and mouse anti-goat IgG (#sc-2354; 1:2,000, Santa Cruz Biotechnology).
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6

Western Blot Analysis of FATP2 and MTTP

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Solute carrier family 27 member 2 (FATP2) and microsomal triglyceride transfer protein (MTTP) were assessed by western blot. The protein concentration was determined according to the Bradford protocol [20 (link)]. Protein samples (40 μg) were denaturalised at 95 °C for 3 min in Laemmli buffer [22 (link)] and loaded into 4–15% Mini-PROTEAN TGX Precast Gels (BioRad, Hercules, CA, USA). The proteins were then transferred onto PVDF membranes (Millipore, MA, USA) by electroblotting and later blocked with 5% casein and 0.5% bovine serum albumin (BSA) PBS-tween buffer for 2 h at room temperature. Subsequently, membranes were incubated with anti-FATP2 (1:500) (Santa Cruz Biotech, Santa Cruz, CA, USA), anti-MTTP (1:500) (Abcam, Cambridge, UK) and anti-α-tubulin (1:2000) (Cell Signaling, Beverly, MA, USA) for at least 1 h at room temperature and kept at 4 °C overnight. After washing, membranes were incubated with secondary antibodies (mouse anti-goat IgG; 1:5000 and mouse anti-rabbit IgG; 1:5000) (Santa Cruz Biotech, Santa Cruz, CA, USA); the immunoreactive proteins were detected by the Forte Western HRP substrate (Millipore; Burlington, MA, USA), and the blots were imaged by scanning with the ChemiDoc™MP Imaging System (Bio-Rad, Hercules, CA, USA). α-tubulin was used as housekeeping.
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7

Immunohistochemical Staining of S100 Protein

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Sections were deparaffinized in Histoclear and rehydrated through ethanols. Peroxidase blocked (3% hydrogen peroxide in methanol) for 15 min and washed in PBS. Antigen retrieval was achieved at 95 °C for 20 min in citrate buffer, before blocking (10% NCS, 0.1% BSA, 0.4% Triton‐X‐100) for 1 h. Primary antibody (S100, Abcam, ab52642, 1:100) was then applied for 1 hand washed in PBS before a biotin conjugated secondary antibody (Mouse anti‐rabbit IgG, Santa Cruz Biotechnology, California, US, sc2491, 1:200) was added for 1 h. Slides were then washed in PBS and ABC reagent (Santa Cruz Biotechnology) for 30 min before being developed in DAB reagent (Vector Laboratories). Slides were washed in dH2O and counterstained in Gill's Hematoxylin (Sigma‐Aldrich) before being dehydrated, cleared in Histoclear and mounted using Omnimount.
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8

PCNA Protein Expression in Testes

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The testes were dissected out and homogenized in pre-chilled RIPA buffer (50 mM Tris–HCl, 150 mM NaCl, 0.5% Sodium deoxicholate, 0.1% SDS, 1% Tween-100, 5 mM EDTA, 1 mM EGTA, 1 mM PMSF). The lysate were centrifuged at 12,000 g for 15 min at 4 °C to pellet the debris. Supernatant solutions were collected as whole cytoplasm protein for analyzing PCNA. Protein concentrations were determined by the Coomassie blue protein binding method using bovine serum albumin as standard. Then samples containing equal amounts of protein (50 μg) were boiled in protein loading buffer for 10 min, separated on 12% SDS-polyacrylamide gels and transferred to PVDF membranes. The membranes were blocked with 3% BSA in Tris-buffer saline. Then the membranes were incubated at 4 °C overnight with the PCNA antibody (1:1000) and β-actin antibody (1:1000), respectively (Santa Cruz Biotechnologies, Santa Cruz, CA). After washing, the membranes were incubated with a horseradish peroxidase conjugated secondary antibody (mouse anti-rabbit IgG, 1:5000; rabbit anti-goat IgG, 1:5000) (Santa Cruz Biotechnologies, Santa Cruz, CA) for 1 h at room temperature and were visualized using an enzyme-linked chemiluminescence reaction by imager instrument (Fujifilm, Las-3000). Relative intensities of the bands were quantified by Image-Pro Express 6.0 software.
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9

Western Blot Analysis of Cell Signaling Proteins

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Protein samples were separated in polyacrylamide gels (7 to 12%, depending on the target protein) and transferred to nitrocellulose membranes using the Trans-Blot Turbo Transfer System (Bio-Rad). Western blotting (WB) was performed as described previously [56 (link)]. Primary antibodies used were anti-CD6 mAb (MEM98, EXBIO), anti-RasGAP mAb (B4F8, Santa Cruz Biotechnology), anti-p21 Ras mAb (Cytoskeleton, Inc), anti-α-tubulin mAb (B-5-1-2, Merck), anti-ERK 2 rabbit polyclonal (C14, Santa Cruz Biotechnology), and Phospho-p44/42 MAPK rabbit polyclonal (Cell Signaling Technology); secondary antibodies used were HRP-conjugated goat anti-mouse IgG (BioLegend), rat anti-mouse IgG (Abcam) for detection of CD6 in MEM98 immunoprecipitates, and mouse anti-rabbit IgG (Santa Cruz Biotechnology). Membranes were developed with Amersham ECL Select/Prime Western Blotting Detection Reagent (Cytiva). Data were acquired using the ChemiDoc XRS+ System (Bio-Rad) and analyzed by Fiji [57 (link)].
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10

Western Blot Protein Detection Protocol

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Western blotting was performed by following the standard methods [19 (link)]. First, proteins were loaded on SDS/PAGE. After running, proteins in the gel were transferred on to PVDF membranes (Millipore, Bedford, MA, USA) by electrophoresis (Millipore, Billericay, Massachusetts). Then the membranes were blocked with 5% bovine serum albumin (BSA, Sigma–Aldrich, St. Louis, Missouri) for 1 h. Next, membranes were incubated with primary antibodies at 4°C overnight, which was followed by the secondary antibody incubation at room temperature for 1 h on the second day. The primary antibodies included anti-PTPN3 (1:1500, Abcam, Cambridge, MA, U.S.A.) and anti-GAPDH (1:1500, Santa Cruz Biotechnology). The secondary antibody was rabbit-anti-mouse IgG (1:2000, Santa Cruz Biotechnology, Santa Cruz, CA, U.S.A.). ECL Chemiluminescence Detection System (Thermo Fisher Science, Rochester, New York) was used to detect the chemical signal. The intensities of individual protein bands were quantified by Bio-Rad Quantity One software (Bio-Rad, Hercules, CA, U.S.A.). All procedures in the trial were repeated in triplicate.
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