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6 protocols using 13c6 nnal

1

Quantifying Tobacco-Derived Biomarkers

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NNAL, [13C6]-NNAL, NNAL-O-glucuronide, NNAL-N-glucuronide, NNK-N-oxide and NNAL-N-oxide were obtained from Toronto Research Chemicals (Ontario, Canada). Oasis HLB (3 cc) and Oasis MCX (2 mg solid phase extraction 96-well plates) were purchased from Waters (Milford, MA). All acids and organic solvents were MS grade.
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2

Quantification of Tobacco Nitrosamines

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NNAL, [13C6]-NNAL, NNAL-O-glucuronide, NNAL-N-glucuronide, NNK-N-oxide, and NNAL-N-oxide were obtained from Toronto
Research Chemicals (Ontario, Canada).
Oasis HLB (3 cc) and Oasis MCX (2 mg solid phase extraction 96-well
plates) were purchased from Waters (Milford, MA). All acids and organic
solvents were MS grade.
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3

Isolation and Characterization of DNA Adducts

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The AIN-93G and AIN-93M powdered mouse diets were purchased from Harlan Teklad (Cambridgeshire, UK). Natural DHM was isolated from a kava product supplied by Gaia Herbs, Inc. (Brevard, NC), following reported protocols.20 (link) NNK, [13C6]NNK, [13C6]NNAL, [CD3]O6-mG and [4-CD2, CD3]NNAL-O-gluc were purchased from Toronto Research Chemicals (Toronto, ON, Canada).22 (link)O6-methylguanine (O6-mG) was purchased from Midwest Research Institute (Kansas City, MO). 7-[4-(3-Pyridyl)-4-oxobut-1-yl]guanine (7-pobG), O2-[4-(3-pyridyl)-4-oxobut-1yl]thymidine (O2-pobdT), O6-[4-(3-pyridyl)-4-oxobut-1-yl]-2′-deoxyguanosine (O6-pobdG), 7-[4-(3-pyridyl)-4-hydroxobut-1-yl]guanine (7-phbG), O2-[4–(3-pyridyl)-4-hydroxobut-1yl]thymidine (O2-phbdT), O6-[4-(3-pyridyl)-4-hydroxobut-1-yl]-2′-deoxyguanosine (O6-phbdG) and their corresponding deuterated analogs were synthetized following reported procedures.23 (link),24 (link) Micrococcal nuclease and phosphodiesterase II were purchased from Worthington Biochemical Corporation (Lakewood Township, NJ). Alkaline phosphatase was from Roche Molecular Biochemicals (Pleasanton, CA).
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4

Quantification of Tobacco-Specific Nitrosamines

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We purchased [pyridine-D4]NNN and [13C6]NNN from Cambridge Isotope Laboratories (Andover, MA), while [pyridine-D4]nornicotine, NNN, NNAL, and [13C6]NNAL (Figure 1) were obtained from Toronto Research Chemicals (Ontario, Canada). Recombinant β-glucuronidase (catalog # G8295) was purchased from Sigma-Aldrich (Milwaukee, WI). Phosphate buffered saline was procured from Invitrogen (Grand Island, NY). All other chemicals were from Sigma-Aldrich, Fisher Scientific (Fairlawn, NJ), or Alfa Aesar (WardHill, MA). True Taper® 96-well plates were procured from Analytical Sales & Services (Pompton Plains, NJ) and silicone cap mats required to cover the 96-well plates were from Phenomenex (Torrance, CA). Five ml Biotage Isolute Supported Liquid Extraction+ (SLE+) diatomaceous earth-based liquid-liquid extraction cartridges were obtained from Biotage (Charlotte, NC) and Oasis MCX 60 mg, 60 μm solid-phase extraction 96-well plates were from Waters (Milford, MA). Strata SI-1 Silica (55 μm, 70 A, 100 mg) 96-well SPE plates were purchased from Phenomenex (Torrance, CA). A Cerex 96-well positive pressure processor (Chromtech, Apple Valley, MN) and an Eppendorf multi-channel pipette were used during sample processing.
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5

Quantitative Analysis of Tobacco Biomarkers

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Cotinine, [13CD3]Cotinine, NNAL, and [13C6]NNAL (Figure 1), were procured from Toronto Research Chemicals (Ontario, Canada). Recombinant β-glucuronidase (catalog # G8295) was purchased from Sigma-Aldrich (Milwaukee, WI). True Taper® 96-well plates for sample processing and analysis were from Analytical Sales & Services (Pompton Plains, NJ) while silicone cap mats used to cover the 96-well plates were purchased from Phenomenex (Torrance, CA). Four hundred μL Isolute SLE+ diatomaceous earth solid-phase extraction 96-well plates were from Biotage (Charlotte, NC) while Oasis MCX 10 mg, 30 μm solid-phase extraction 96-well plates were from Waters (Milford, MA). A Cerex 96-well positive pressure processor (Chromtech, Apple Valley, MN) was utilized during sample processing. Dulbecco’s PBS was purchased from Invitrogen (Grand Island, NY) and the rest of the chemicals were obtained either from Fisher Scientific (Fairlawn, NJ), Sigma-Aldrich (Milwaukee, WI) or Alfa Aesar (WardHill, MA) and used without further purification unless otherwise noted. An Eppendorf multichannel pipettor was used during sample processing.
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6

Analytical Standards for Tobacco Biomarkers

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Analytical standards for NNAL, NNN, cotinine and their respective isotope-labeled analogues [13C6]NNAL, 13C6NNN, and [D3]cotinine were obtained from Toronto Research Chemicals, Inc. (Canada). β-Glucuronidase (Type IX from E. coli) was purchased from Sigma Aldrich Chemicals (Bangalore, India). Diatomaceous Earth Chem Elut (5 mL unbuffered) cartridges and Bond Elut 1 cc (100 mg, LRC-SI) cartridges were purchased from Agilent Technologies (Bangalore, India). Oasis MCX 1 cc (30 mg) extraction cartridges were obtained from Waters (Bangalore, India). CH2Cl2, EtOAc, MeOH, and other sample preparation reagents were purchased either from Sigma Aldrich, Fisher scientific or Sisco Research Laboratories (Mumbai, India).
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