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54 protocols using version 16

1

Obesity Indices and Metabolic Syndrome

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Statistical analyses were conducted using SPSS version 16.0 for Windows (SPSS, Chicago, IL) and MedCalc version 16.8 (http://www.medcalc.be). A P value < .05 was considered statistically significant. Continuous variables are shown as the mean ± standard deviation (SD), and categorical variables as case number and percentage. Comparisons between groups were performed using Student t test for continuous variables, and the Chi-squared test for categorical data. Partial correlation analysis was used to assess associations between the obesity indices and metabolic risk factors.
Adjusted odds ratios (ORs) and 95% confidence intervals (95% CIs) of 1-SD incremental increase in the obesity indices in association with MetS and its other components were calculated by multiple logistic regression analyses. Age, education level, smoking status, alcohol consumption, physical exercise, menopausal status (only women), and family history of the corresponding condition were used as confounders for multivariate analysis. ROC curves were plotted and analyzed using MedCalc version 16.8 (http://www.medcalc.be). Sensitivities and specificities were calculated and AUCs were compared to show the efficacy of the various obesity indices to discriminate subjects with and without MetS.
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2

Statistical Analysis of Skewed Data

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Based to the skewed distribution of the parameters most data are demonstrated as median and range. Mann–Whitney U or chi-squared test were conducted for two-group analysis while Kruskal–Wallis test was used for analysis between multiple groups. Subgroup analysis was illustrated as box plots including median, quartiles, range, and extreme values of the given data with whiskers ranging from the minimum to the maximum value. Statistic outliers defined as a value that is smaller than the lower quartile minus 1.5 times the interquartile range or larger than the upper quartile plus 1.5 times the interquartile range were displayed as separate points [17 (link)]. Spearman linear correlation analysis was performed to assess differences between various variables. Kaplan–Meier curves were generated to estimate the survival function and a log-rank test was performed to assess differences between groups [18 (link)]. Receiver operating characteristic (ROC) curves were generated by plotting sensitivity against 1-specificity evaluating the value of a predictive marker or a composite score [19 (link)]. Differences between ROC curves were analyzed as previously described [20 (link)]. SPSS Version 23 (SPSS, Chicago, IL, USA) and MedCalc Version 16 (MedCalc Software, Ostend, Belgium) were used for all statistical analyses.
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3

Recurrent Goiter Prevalence Study

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The sample size was estimated based on the principle of detecting a 5% difference in the prevalence of recurrent goiter with a 90% probability at p < 0.05. The univariate relation between patient characteristics and the development of goiter recurrence and the need for reoperation were examined. The statistical significance of categorical variables was evaluated by the χ2 test and F test, whereas the Student’s t-test was used to evaluate continuous variables. Ten-year recurrence-free survival was calculated using the Kaplan–Meier method, with the log rank test for comparison between study groups. All the data were entered onto a dedicated spreadsheet (Microsoft Excel 2010; Microsoft Corporation, San Jose, CA, USA) by a medical assistant and then analyzed by a statistician (MedCalc, version 16, Belgium). p < 0.05 was considered to indicate significance.
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4

Evaluating CRC Biomarker Accuracy

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The Student's t-test was adopted for the comparison of the expression levels analysed between CRC cases and controls. ROC (Receiving Operating Characteristic) curve analysis was used to assess the accuracy with which the parameters diagnosed CRC, in order to discriminate between patients with CRC and controls. Calculation of both the area under the curve and the corresponding 95% confidence intervals was evaluated using MedCalc version 16 for statistical analyses. To determine the cut off of the markers that allows for the best discrimination between the two groups, the discriminant analysis was performed using SPSS statistical software, version 23. The sets of healthy and cancer patients were considered as grouping variable and the four independent markers grouped together as predicted variable for the panel.
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5

Accuracy of Pulmonary Embolism Prediction

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Statistical analyses were performed with SPSS version 23 (IBM Corp. in Armonk, NY) and Medcalc version 16 (MedCalc Software bvba, Ostend, Belgium). Descriptive statistics were presented as frequency (n) and percentage (%) for categorical variables, and median with interquartile range (IQR) for non-normally distributed variables. ROC analysis was used for estimating the accuracy of IPI in predicting pulmonary embolism. The area under ROC curve (AUC) for IPI was calculated, and Delong et al. method was used for calculating the AUC (18) . Youden J index was used for estimating the best cut-off values. Sensitivity, specifi city, positive likelihood ratio (+LR), negative likelihood ratio (-LR), and accuracy with 95 % confi dence intervals (CIs) were calculated. The value of p < 0.05 was set as a statistically signifi cance level.
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6

Comparative Analysis of B-mode US and SEUS

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Statistical analyses were performed using commercially available software programs (SPSS, version 23; SPSS, IBM, Armonk, NY, USA; or MedCalc, version 16, MedCalcSoftware, Mariakerke, Belgium). In order to compare the number of detected lesions, the conspicuity of the target lesion, and the subjective technical feasibility on B-mode US and SEUS, a paired T-test was used. The detection rate of necrosis within the target lesion was compared between B-mode US and SEUS using the Mc-Nemar test. The chi-square test was used to determine whether detection of necrosis within the lesion was or was not associated with change of the target lesion and the target portion. To determine whether the number of detected lesions on B-mode US and SEUS differed from those of the reference image, a pair-wise comparison with the paired t-test was used. p<0.05 was considered to indicate statistical significance. All numerical data were expressed as mean values ± standard deviations (SD).
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7

Diagnostic Performance of HCC Detection

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All analyses were performed on a per-lesion basis. Per-lesion estimates of diagnostic performances (sensitivity, specificity, positive predictive value [PPV], and negative predictive value [NPV]) were calculated. The sensitivities and specificities of definite HCC category and the combination of definite and probable HCC categories of KLCA-NCC 2018 were compared using the McNemar’s test. The χ2 test was used to compare the diagnostic performances of definite HCC and the combination of definite and probable HCC of KLCA-NCC 2018 between the two independent ECA-MRI and HBA-MRI groups. Inter-reader agreement was evaluated using Cohen κ coefficient. The κ-value (the level of agreement) was defined as follows: poor, 0.00–0.20; fair, 0.21–0.40; moderate, 0.41–0.60; good, 0.61–0.80; and excellent, 0.81–1.00. Statistical analyses were performed using MedCalc version 16.2.1 (MedCalc Software, Ostend, Belgium).
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8

Predictors of Surgical Complications

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Descriptive statistics were expressed as the mean ± standard deviation (SD) or the percentage for continuous and non-numeric variables, respectively. Continuous and categorical variables were compared with the students’ t-test and chi-squared test, respectively. Significance was set at P<0.05. Univariate and multivariate analyses were performed to identify independent predictors of complications. After performing a Pearson’s correlation test, significant factors in univariate analyses were included in multivariate logistic regression models. Statistical analyses were performed with MedCalc version 16.2.1 (MedCalc Software bvba, Oostende, Belgium).
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9

Comparative Analysis of ECA-MRI and HBA-MRI Criteria

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The baseline characteristics of patients and lesions were compared between the ECA-MRI and HBA-MRI groups using Fisher’s exact test for categorical variables and two-sample t-test for continuous variables. The per-lesion sensitivities and specificities of the 2018 and 2022 KLCA-NCC imaging criteria were calculated (Supplementary Table 1) and compared using McNemar’s test. The chi-square test was conducted to compare the diagnostic performances of the 2018 and 2022 KLCA-NCC criteria between the two independent ECA-MRI and HBA-MRI groups. Inter-reader agreements for the categorization of lesions according to the 2018 and 2022 KLCA-NCC criteria were evaluated using Cohen’s κ coefficient. The κ values were interpreted as follows: poor, 0.00–0.20; fair, 0.21–0.40; moderate, 0.41–0.60; good, 0.61–0.80; and excellent, 0.81–1.00. Statistical analyses were performed using MedCalc version 16.2.1 (MedCalc Software, Ostend, Belgium). A P-value <0.05 was considered statistically significant.
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10

Association of Pulmonary Function and VO2peak

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Statistical analysis was performed using MedCalc Version 16.2.1 (MedCalc Software, Mariakerke, Belgium). Follow-up data were compared to baseline using paired t-test. Lower limit of normal (LLN) were defined as a z-score <−1.64 (spirometry, diffusing capacity, and VO2peak), and upper limit of normal (ULN) was defined as z-score >1.64 (LCI2.5). Linear regression was performed for continuous parameters. P-value <0.05 was considered statistically significant. Covariates found to be significant in univariate analysis were included in multiple linear regression analysis, with stepwise forward and backward selection to analyze how N2MBW indices and VO2peak were related to other parameters.
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