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50 protocols using alisertib

1

Alisertib Treatment in Inpp5e Mutant Mice

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Alisertib treatment was performed based on previously published protocols32 (link),33 (link). Starting at P9 Inpp5eΔ/Δ and Inpp5eΔ/+ mice were treated once daily for 5 days with Alisertib delivered orally by pipette in a suspended solution with a final composition of 3.6 mg/ml Alisertib (S1133, Selleck Chemicals) in 10% 2-hydroxypropyl-β-cyclodextrin (H5784-10ML, Sigma–Aldrich) with 1% (vol/vol) sodium bicarbonate (S8761-100ML, Sigma–Aldrich) and 5% glucose (49163-100ML, Sigma–Aldrich). Mice were dosed with a volume to deliver Alisertib at 10 mg/kg. Mouse body weights were recorded daily. Alisertib was largely insoluble and vortexed before each use to resuspend. Mice were then given 2 recovery days before sacrifice at P15. AurkaΔ/Δ and Inpp5eΔ/Δ;AurkaΔ/Δ treatment groups were also included to determine the specificity of any phenotypes observed, given Alisertib’s broad inhibition profile31 (link),68 (link). Solutions were stored at 4 degrees Celsius for up to 1 month.
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2

Maintenance of Breast Cancer Cell Lines

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The breast cancer cell lines MCF‐7, MDA‐MB‐231, MDA‐MB‐468 and HCC1954 were maintained in RPMI‐1640 plus GlutaMAX‐1 (Gibco) supplemented with 10% fetal calf serum (FCS) and 10 µg/ml insulin. HEK293T cells were maintained in DMEM (Gibco) plus 10% FCS. JQ1, I‐BET762 and I‐BET151 were purchased from Cayman Chemical (Ann Arbor, MI, USA). Trametinib, olaparib, palbociclib, alisertib, dasatinib, 17‐AAG, lapatinib, trastuzumab, cycloheximide (CHX) and Mcl‐1 inhibitors (S63845 and TW‐37) were commercially sourced from Selleckchem (Houston, TX, USA).
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3

Inhibiting EZH2 and AURKA in HCC

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Human HCC cell lines (Hep3B and Huh7) were purchased from Beijing Cell Resource Center, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences. Cells were cultured in Dulbecco’s Modified Eagle Medium (DMEM, HyClone, United States, SH30243-01) with 10% fetal bovine serum (FBS, HyClone, United States, SH30084) and 1% penicillin/streptomycin (HyClone, United States, SV30010) at 37°C in 5% CO2. The EZH2 inhibitor gambogenic acid was purchased from MCE (Shanghai, China). The AURKA inhibitor alisertib was purchased from SELLECK (Shanghai, China). The solvent for gambogenic acid and alisertib is DMSO (Sigma Aldrich, United States).
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4

Ferroptosis Inducers and Inhibitors Screening

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erastin (Bio-techne, 5449); SAS (MedchemExpress, HY-14655); RSL3 (Cayman, 19288); FIN56 (Cayman, 25180); FINO2 (MedchemExpress, HY-129457); PANKi (Cayman, 31002); BSO (Sigma, B2515); DEM (Sigma, D97703); etomoxir sodium salt (Selleckchem, S8244); lovastatin (Selleckchem, S2061); TOFA (Selleckchem, S6690); dorsomorphin (Selleckchem, S7306); alisertib (Selleckchem, S1133); verdinexor (Cayman, 26171); leptomycin B (Cayman, 10004976); tipifarnib (MedchemExpress, HY-10502); methotrexate (Selleckchem, S1210); pitstop2 (Sigma, SML1169); EML425 (Selleckchem, S2977); C646 (Selleckchem, S7152); brequinar (Selleckchem, S3565); elamipretide (Selleckchem, S9803)
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5

Pharmacological Cell Cycle Arrest and Release

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For pharmacological inhibition of PLK1, BI2536 (Selleckchem), BI6727 (Volasertib, Selleckchem), and poloxin (Selleckchem) were added to cells at the indicated final concentrations in growth medium. For inhibition of Aurora A kinase, Alisertib (MLN8237, Selleckchem) was added to cells at the indicated final concentrations in growth medium. Arrest of cells in S-phase and mitosis was achieved by supplementing growth medium with 3 µM aphidicolin (Sigma) or 330 nM nocodazole (Sigma), respectively, for 16 h. Arrest of cells at the G2/M boundary was achieved by growth medium with 9 µM RO-3306 (Selleckchem) for 20 h. Release from cell cycle arrest was performed by three washes with pre-heated (37 °C) growth medium.
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6

Alisertib Anticancer Assay Protocol

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Alisertib was purchased from Selleck (Houston, TX, USA). Anti-β-actin primary antibody was purchased from Sigma Aldrich (St. Louis, MO, USA). Antibody against human AURKA (#14475) was purchased from Cell Signaling Technology (Beverly, MA, USA). Immobilon Western Chemiluminescent HRP detection kit was from Millipore (Burlington, MA, USA). Cell counting kit-8 (CCK-8) was from Dojindo Laboratories (Kyushu, Japan). Caspase-Glo 3/7 assay kit was from Promega (Madison, WI, USA). Annexin V-FITC Apoptosis Detection kit was from BD Pharmingen (Franklin Lakes, NJ, USA). Lipofectamine RNAiMAX was from Invitrogen (Carlsbad, CA, USA). Cell culture medium was obtained from Gibco (Grand Island, NY, USA). Fetal bovine serum (FBS) was from Biological Industries (Kibbutz Beit Haemek, Israel). Cell extraction buffer was from Life Technologies (Grand Island, NY, USA). Alisertib was dissolved in DMSO to make a stock solution of 10 mM.
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7

Small Molecule Inhibitors Protocol

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Rigosertib, vinblastine, blebbistatin, BI2536, alisertib, and paclitaxel were purchased from Selleck chemicals. ABT-751 was purchased from ApexBio. STLC and colchicine were purchased from Tocris. ARS-853 was generously provided by the Shokat lab (UCSF).
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8

Inducing Tetraploid Cell State

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Cells were grown in DMEM medium (RPE-1) or RPMI 1640 medium (HL60, K562, KG1α, and THP1) supplemented with 10% fetal bovine serum (FBS) and 1% penicillin/streptomycin and maintained at 37° C with 5% CO2. For experiments where PLK4 expression was induced, media was supplemented with 2 μg/mL Doxycycline for 36 hours. Alternatively, cells were treated with 30 μM Cytochalasin B for 16 h to induce cytokinesis failure and generate tetraploid cells with double the normal centrosome number [8 (link)]. Drug treatments to subsequently inhibit AurA kinase (alisertib; MLN8054, Aurora A inhibitor 1, MK-5108 (VX-689): Selleckchem) were performed at the indicated concentrations for 16-18 hours for immunofluorescence and FACs analysis, or as otherwise indicated. Unless otherwise noted, all experiments to inhibit Aurora A kinase were performed with the highly specific Aurora A kinase inhibitor alisertib at a concentration of 100 nM.
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9

Evaluating Small Molecule Inhibitors

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Cells were treated with 0.5 or 1 μM TC-A2317 (Tocris, 4066), 0.5 μM alisertib (Selleckchem, S1133) or 50 nM paclitaxel (EMD Millipore, 580555) for indicated times. All drugs are dissoved in DMSO as a vehicle. The final concentration of vehicle in culture medium was 0.1%.
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10

Evaluation of Anti-Cancer Compounds

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Tozasertib, alisertib, and nutlin-3 were purchased from Selleck Chemicals (Houston, Tx, USA), cisplatin and vincristine from Gry-Pharma GmbH (Kirchzarten, Germany), and doxorubicin from Cell-Pharm GmbH (Bad Vilbel, Germany).
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