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Ds 11 uv vis spectrophotometer

Manufactured by DeNovix
Sourced in United States

The DS-11+ UV-Vis spectrophotometer is a compact and accurate instrument for measuring the absorbance or transmittance of light through a sample across the ultraviolet and visible light spectrum. It is designed to provide precise measurements of nucleic acid and protein concentrations.

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3 protocols using ds 11 uv vis spectrophotometer

1

Quantifying cGAS-DNA Saturation Concentrations

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To determine saturation concentrations in vitro, cGAS proteins and DNA mixtures were prepared at indicated protein concentrations with the same DNA concentrations using a reaction buffer of 20 mM Tris-HCl (pH 7.5), 15 mM NaCl, 135 mM KCl, 1 mg mL−1 BSA, and 1 mM TCEP. Phase separation was induced at 25°C for 30 min to fully equilibrate samples and reactions were then analyzed by measuring either turbidity or fluorescence intensity. For turbidity measurements, light scattering was quantified as the absorbance at 340 nm at 25°C using a DeNovix DS-11+ UV-Vis spectrophotometer with a 10 mm optical path length. The relative saturation concentrations were determined by a two-tailed T test of the adjacent values across each pair of points in the protein/DNA titration. For fluorescence intensity analysis, microscopy images were acquired at 25°C using a Leica TCS SP5 X (Leica Microsystems) mounted on an inverted microscope (DMI6000; Leica Microsystems) with an oil immersion 63×/numerical aperture 1.4 objective lens (HCX PL APO; Leica Microsystems). For each field of view, phase separation was quantified with FIJI (Schindelin et al., 2012 (link)) by measuring total fluorescence intensity for reach field of view. The relative saturation concentrations were determined by a two-tailed T test of the adjacent values across each pair of points in the protein/DNA titration.
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2

Quantifying Protein Concentrations in Biological Samples

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For protein concentrations, we applied the DS-11 UV-Vis Spectrophotometer (DeNovix, Wilmington, DE, USA). The sera samples were diluted 10 times in PBS, while the depleted sera fractions (DS) and IgG fractions were measured directly without any dilutions. PBS was used as a blank for sera samples and IgG fractions, while BUFFER A from a kit was used as a blank for DS. All samples were measured 3 times.
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3

Western Blot Analysis of Apoptosis Markers

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PC3 cells were cultured as described above and seeded in 6-well plates at a concentration of 3.0 × 105 cells/mL, and allowed to grow for 42 h before treatment. Depending on the solvent used to dilute drugs, DMSO or water was added as vehicle control. After treatment, cells were collected and lysed in 1% NP40 Lysis buffer. Protein was quantified using the Denovix DS-11 UV-Vis spectrophotometer. Samples were loaded into pre-made 4–20% acrylamide Mini-PROTEAN TGX Stain-Free Protein gels (Bio-rad, Montreal, QC, Canada). PageRuler Plus Prestained Protein ladder (Thermo Fisher, Waltham, WA, USA) was loaded in one well to determine the molecular weight of proteins. Antibodies against PARP was purchased from Thermofisher (cat. #MA3-950) and caspase 3 (cat. #06-735) and tubulin (cat. #T5168) were purchased from Cell Signaling Inc., Boston, MA, USA. The antibodies were incubated on membranes (1:1000 ratio) per manufacture instructions. Membranes were developed by enhanced chemiluminescence using the Pierce ECL Western Blotting substrate (Thermo Fisher) according to manufacturer’s instructions. The membranes were imaged using the ImageQuant LAS 500 gel imager (GE Healthcare Life Sciences, Chicago, IL, USA). For all western blot membranes, the reference gene, Actin, was used as a loading control. Protein images obtained from the gel imager were quantified using ImageJ software (v. 2.0).
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