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Rnaiso plus rna isolation kit

Manufactured by Takara Bio
Sourced in China

RNAiso Plus is a reagent designed for the isolation of total RNA from various biological samples. It is a single-step method that utilizes guanidinium thiocyanate and phenol-chloroform extraction to effectively separate RNA from DNA and proteins.

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6 protocols using rnaiso plus rna isolation kit

1

RNA Isolation from Biological Samples

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Total RNA was isolated using the RNAiso Plus RNA isolation kit from Takara (Dalian, China), as per the manufacturer’s instructions. The RNA was quantified using the absorbance at 260 nm and the purity assessed from the ratio of absorbance at 260 and 280 nm. The RNA used for all assays had a ratio of A260/A280 greater than 1.90.
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2

Quantification of miRNA-196a Isoforms

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A549 cells and H1299 cells were planted on cell culture vessel before transfection of expression plasmid vectors, each vector was transfected into cells using Lipofectamine 3000 transfection reagent (Invitrogen, USA). We use the RNAiso Plus RNA isolation Kit (Takara, Japan) to isolate the total RNA from cells transfected with each of the vectors (empty vector, pre-miR-196a-C, and pre-miR-196a-T) 48 hours after transfection. Instantly, RNA samples were reverse transcribed to cDNA using the MicroRNA First Strand cDNA Synthesis Kit (Sangon, China) which can polyadenylate the miRNAs along with the cDNA synthesis.
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3

Quantifying Gene Expression Levels

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To quantify gene expression levels, samples of approximately 108 cells were harvested after inoculation for 16 h. Total RNA was extracted from each of the samples using the RNAiso Plus RNA isolation kit (TaKaRa, Dalian, China) after liquid nitrogen grinding according to the manufacturer’s instructions. Following genomic DNA eraser treatment to remove DNA, cDNA was synthesized from 500 ng of total RNA using random primers with the PrimerScript RT reagent kit. The synthesized cDNA was then amplified in a quantitative PCR (qPCR) with primers Miox-a/Miox-s, Udh-a/Udh-s, and Pgk-a/Pgk-s respectively for relative quantification of mRNA levels of miox4 and udh, using the phosphoglucokinase gene (PGK1) as an internal control. qPCR reactions containing SYBR Premix Ex Taq were performed in a Thermo Scientific CFX96 instrument. Each reaction was carried out in triplicate, and the reported Ct value was the average of the triplicate samples. Transcript levels were calculated using the − ΔΔCt method [32 (link)].
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4

PRRSV Viral RNA Quantification via qPCR

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As we previously described [5 (link)], total RNA was isolated from Marc-145 cells or PAMs approximately 60 h post PRRSV infection and AS-ON transfection using the RNAiso Plus RNA isolation kit (Takara Dalian, China), and subjected to reverse transcription (Takara PrimerScript RT reagents kit) and qPCR analysis (SYBR Primer Ex Taq II kit). β-actin served as an internal control. The primer pairs used in this study are listed in Table 1. The ΔΔCt method [27 (link)] for relative quantification of gene expression was applied to determine viral RNA levels using SYBR Green real-time PCR. The relative amount of PRRSV RNA was normalized to β-actin mRNA. Amplification and detection of samples were performed with the CFX96 Touch Real-Time PCR Detection System (Bio-Rad, USA).
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5

Quantification of Viral RNA and Cellular Transcripts by qPCR

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As we previously described32 (link), total RNA was isolated from Marc-145 cells at different time points post transfection and PRRSV infection using the RNAiso Plus RNA isolation kit (Takara Dalian, China, Cat. #9108/9109), and subjected to reverse transcription (Takara PrimerScript RT reagents kit, Cat. #RR037A) and qPCR analysis (Clontech, SYBR Primer Ex Taq II kit, Cat. # RR820Q). The reverse transcription was performed in 10 µl reaction incubated at 37 °C for 15 mins and then at 85 °C for 5 s, containing 2 µl of 5× Prime Script Buffer, 0.5 µl of Prime Script RT Enzyme Mix 1, 0.5 µl of Oligo dT primer, 0.5 µl of Random 6 mers, 3 µl of RNA (480 ng) and 3.5 µl of water. The qPCR reaction was carried out in 20 µl reaction, containing 10 µl of SYBR Premix Ex TaqTM II (2×), 0.4 µM forward primer, 0.4 µM reverse primer and 1.5 µl of cDNA template (480 ng). The primer pairs used in this study are listed in Table 1. Amplification and detection of samples were performed with the CFX96 Touch Real-Time PCR Detection System (Bio-Rad, USA). The ΔΔCt method33 (link) (ABI PRISM 7700 Sequence Detection System. 1999. User Bulletin # 2.) for relative quantification of gene expression was applied to determine viral RNA (ORF7) and cellular RACK1 and IFNα mRNA levels using SYBR Green real-time PCR. GAPDH served as an internal control.
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6

Quantifying Gene Expression in Tissues

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Total RNA from frozen tissues and cell lines were extracted using the RNAiso Plus RNA isolation kit (Takara) according to the manufacturer’s instruction with DNase treatment. Five hundred nanogram of total RNA was reverse transcribed using oligo (dT) primer (Primer Script RT, Takara) for subsequent qPCR (SYBR Primer Ex Taq II, Clontech) with gene-specific primers (Table 1) on LightCycler480 (Applied Biosystems). The relative expression was calculated using the ΔΔCt method. β-ACTIN served as an internal control. For technical reproducibility, the experiment was independently repeated in triplicate.
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