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Gene specific primers

Manufactured by Roche
Sourced in United States

Gene-specific primers are short, synthetic DNA sequences designed to target and amplify specific regions of a gene. They serve as the starting points for DNA amplification during polymerase chain reaction (PCR) and other molecular biology techniques.

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3 protocols using gene specific primers

1

Genetic Analysis of IL-6 and IL-28B Polymorphisms

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A 175 base pair (bp) fragment of the human IL-6 gene spanning the promoter IL-6 G-174C region was amplified with gene specific primers (Roche Diagnostics, Alameda, California, USA). The resulting PCR fragments were analyzed with hybridization probes labeled with LightCycler Red 640. The genotypes were identified by running a melting curve with specific melting points (Tm) (Tib Molbiol GmbH, Berlin, Germany).
Genetic polymorphism in a SNP located near the IL-28B gene (rs12979860) was determined by enzymatic digestion of the PCR product. DNA fragments were amplified by using specific primers. Primer sequences were 5′-GCCTGTCGTGTACTGAACCA-3′, and 5′-GCTCAGGGGTCAAATCACAGAAG-3′, a PCR product of 143 bp was digested with HhaI enzyme and the resulting fragments of 27, 38, 65 and 78 bp were separated on 20% acrylamide gel followed by silver staining (Fig. 1).
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2

mRNA Quantification of Cultured Neurons

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For mRNA measurements of cultured neurons, RNA was isolated at DIV14 using the RNAqueous kit (Ambion). RT-PCR reactions were set up in duplicates for each condition (150 ng total RNA) using the LightCycler 480 reagent kit (Roche), gene-specific primers (Roche), and a 7900HT Fast RT-PCR instrument (Applied Biosystems) with GAPDH as internal control.
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3

mRNA Quantification of Cultured Neurons

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For mRNA measurements of cultured neurons, RNA was isolated at DIV14 using the RNAqueous kit (Ambion). RT-PCR reactions were set up in duplicates for each condition (150 ng total RNA) using the LightCycler 480 reagent kit (Roche), gene-specific primers (Roche), and a 7900HT Fast RT-PCR instrument (Applied Biosystems) with GAPDH as internal control.
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