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C18 solid phase extraction column

Manufactured by Waters Corporation
Sourced in United States

C18 solid phase extraction (SPE) columns are a type of laboratory equipment used for sample preparation and purification. They are designed to selectively extract and concentrate analytes of interest from complex sample matrices. The columns contain a stationary phase made of chemically bonded C18 silica particles, which have a high affinity for non-polar and moderately polar compounds. This allows for the selective retention and separation of target analytes from unwanted matrix components.

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15 protocols using c18 solid phase extraction column

1

Quantification of H2S in Renal Plasma and Tissue

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All chemicals used for liquid chromatography (LC) and mass spectrometry (MS) experiments were of LC‐MS grade. Trypsin Gold was purchased from Promega. Urea, sodium deoxycholate (DOC), Trizma hydrochloride (Tris), DL‐dithiothreitol (DTT), iodoacetamide (IAA), N‐acetyl‐L‐cysteine (NAC), ethylenediaminetetraacetic acid (EDTA), bovine serum albumin (BSA), ammonium bicarbonate and all solvents were provided by Sigma‐Aldrich, unless otherwise specified. Complete protease inhibitor cocktail was offered by Roche. C18 solid‐phase extraction (SPE) columns were acquired from Waters Corporation. Protein concentration was determined by amido black assay using Amido Black 10B (JT Baker Chemical Co.). Cholesterol, glucose and triglyceride plasma levels were determined using the specific assays from DIALAB GMBH. The concentration of renal plasma and renal tissue H2S were determined by the H2S Assay Kit E‐BC‐K355 (Elabscience) according to the manufacturer's instructions.
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2

Quantification of Oxidative Stress Markers

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The following reagents were of LC–MS grade and provided by Merck KGaA (Darmstadt, Germany). Complete protease inhibitor cocktail was purchased from Roche (Mannheim, Germany). C18 solid phase extraction (SPE) columns were acquired from Waters Corporation (Milford, USA). Thiobarbituric acid reactive substances (TBARS) are provided from Merck KGaA (Darmstadt, Germany) and Evolocumab, a monoclonal antibody against proprotein convertase subtilisin/kexin type 9 (PCSK9) from Amgen Europe BV (Breda, Netherlands). The monocyte cell line THP-1 (Tib-202) was purchased from the American Type Culture Collection (ATCC, Manassas, U.S.A.).
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3

Water-borne hormone extraction and CORT analysis

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We stored water samples at -20°C until they were thawed for extraction in Spain. We extracted hormones from water using C 18 solid phase extraction (SPE) columns (Waters Inc.). After extracting into the column, we stored the SPE columns at -20°C until we were ready for methanol elution at Texas State University. All methods follow from [5 (link)]. We measured CORT release rates using enzyme-immunoassay (EIA) kit (Cayman Chemicals Inc.) in duplicate with a 96 well plate reader set at 415 nm (BioTek Powerwave XS). We did not subtract the CORT level measured in the water because we used the same water for all populations in Experiment 1.
We previously validated the use of water-borne hormones on EIA plates and the positive correlation between plasma CORT and water-borne CORT release rates for A. obstetricans [33 ]. Gabor et al. [5 (link)] additionally validated the use of the CORT EIA kits with water-borne hormones for A. muletensis.
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4

Metabolite Profiling of Hibiscus sabdariffa

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Fresh plant parts of Hibiscus sabdariffa were extracted with water for 15 min at room temperature in 1:10 ratio. The aqueous extract was vortexed vigorously and centrifuged at 16,000 × g for 5 min at 4 °C and subjected to flash chromatography by C18 solid phase extraction (SPE) columns (Waters, USA). The fractions were eluted with 60% ethanol/0.01% trifluoroacetic acid (TFA) and analyzed by matrix-assisted laser desorption/ionization-time of flight mass spectrometry (MALDI-TOF MS) (AB SCIEX 4700 MALDI-TOF/TOF).
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5

Pereskia bleo Phytochemical Profiling

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Fresh Pereskia bleo plant parts were extracted with water for 15 min at room temperature at a 1:10 ratio. The aqueous extracts were vortexed vigorously and centrifuged at 16000 × g for 5 min at 4°C before being subjected to flash chromatography using C18 solid phase extraction (SPE) columns (Waters, United States). The fractions were eluted with 60% ethanol and analyzed by matrix-assisted laser desorption/ionization-time of flight mass spectrometry (MALDI-TOF MS; AB SCIEX 4700 MALDI-TOF/TOF). The MALDI spectra were acquired in the m/z range of 500–6000, with a focus m/z 3500. Total laser shots were 2250 with a laser intensity of 3500.
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6

Quantitative Proteomic Workflow with TMT Labeling

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Protein was quantified by BCA (Pierce)
and reduced with 5 mM dithiothreitol and incubated for 45 min at 55
°C. Alkylation was performed with 15 mM iodoacetamide for 30
min in the dark and quenched with 5 mM dithiothreitol. Urea concentration
was diluted to 1.5 M with 50 mM Tris pH 8.0. Proteolytic digestion
was performed by the addition of Trypsin (Promega), 1:50 enzyme to
protein ratio, and incubated at ambient temperature overnight. For
quantitative studies, the resulting peptides were labeled with TMT
8-plex (Pierce) isobaric tag and mixed.42 (link),43 (link) All samples
were desalted using C-18 solid-phase extraction (SPE) columns (Waters,
Milford, MA) prior to nano-LC–MS/MS analysis.
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7

Comprehensive Liquid Chromatography-Mass Spectrometry Protocol

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All reagents for liquid chromatography (LC) and mass spectrometry (MS) analysis were of LC-MS grade and purchased from Merck (Darmstadt, Germany). Trypsin Gold was purchased from Promega (Madison, WI, USA). C18 solid phase extraction columns were purchased from Waters Corporation (Milford, MA, USA). Millipore Protease Inhibitor Cocktail Set I was purchased from Merck (Darmstadt, Germany). Invitrogen SuperScript™ IV First-Strand Synthesis System and Applied Biosystems PowerUp SYBR Green PCR Master Mix were purchased from Thermo Fisher Scientific (Vilnius, Lithuania). Ambion TRIzol Reagent was purchased from Sigma-Aldrich (St. Louis, MO, USA). Invitrogen nucleophosmin monoclonal antibody (NA24), Invitrogen natriuretic peptides A polyclonal antibody, Pierce BCA Protein Assay Kit and Pierce ECL chemiluminescence kit were purchased from Thermo Scientific (Rockford, IL, USA). The moesin polyclonal antibody was purchased from Cell Signaling Technology (Danvers, MA, USA). The S100A8/A9 inhibitor (ABR-238901) was a gift from Active Biotech AB (Lund, Sweden).
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8

Liquid Chromatography and Mass Spectrometry Protocols

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All chemicals used for liquid chromatography (LC) and mass spectrometry (MS) experiments were of LC-MS grade. Trypsin Gold was purchased from Promega (Madison, WI, USA). Urea, sodium deoxycholate (DOC), Trizma hydrochloride (Tris), DL-dithiothreitol (DTT), iodoacetamide (IAA), N-acetyl-L-cysteine (NAC), ethylenediaminetetraacetic acid (EDTA), bovine serum albumin (BSA), and all solvents were provided by Sigma Aldrich, unless otherwise specified. Complete protease inhibitor cocktail was from Roche (Mannheim, Germany). C18 solid phase extraction columns were acquired from Waters Corporation (Milford, CT, USA). Protein concentration was determined with bicinchoninic BCA assay kits (Thermo Fisher Scientific, Inc., Rockford, IL61101, USA). Plasma cholesterol, glucose, and triglyceride levels were determined using specific assay kits from DIALAB GMBH, England. Evolocumab, a monoclonal antibody against PCSK9, was purchased from Amgen Europe B.V. (Breda, Netherlands).
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9

Eosinophil Proteome Preparation for Mass Spec

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Pellets from three donors were solubilized on ice in 8 M urea, 40 mM Tris, pH 8, 30 sodium chloride, 6 mM sodium pyrophosphate, 2 mM magnesium chloride, 1 mM calcium chloride, phosSTOP phosphatase inhibitor (Roche), and 2x mini EDTA-free protease inhibitor (Roche). The combined 75 million purified eosinophils were lysed via sonication and freeze–thaw cycles yielding 1.26 mg of protein for digestion. Protein concentration was determined by BCA assay (Thermo Pierce). Disulfide bonds were reduced at 58 °C for 45 min with 5 mM DTT and carbamidomethylated using 15 mM iodoacetamide for 45 min in the dark at room temperature. The samples were then quenched with 5 mM DTT for 15 min at room temperature and then diluted with 50 mM Tris, pH 8, and 5 mM calcium chloride to reach a final concentration of 1.5 M urea. The sample was digested with trypsin (Promega) (enzyme/protein 1:50) at room temperature on a rocker overnight. The sample was acidified to 0.5% TFA prior to desalting on a C18 solid-phase extraction column (Waters), and the desalted sample was dried to completion.
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10

Liquid Chromatography-Tandem Mass Spectrometry

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ACQUITY UPLC XEVO TQ-S liquid chromatography-tandem mass spectrometer (with electrospray ion source) was from Waters Corporation (Milford, MA, USA). MS2 vortex mixer was from IKA (Staufen, Germany). Centrifuge 5810 high-speed centrifuge was from Eppendorf Corporation (Hamburg, Germany). R-201 rotary evaporator was from Shanghai Kexing Instrument Co., Ltd. (Shanghai, China); N-EVAP 112 nitrogen blowing instrument was from Organomation Company (Berlin, MA, USA); 12-channel solid-phase extraction device was from Supelco company (Bellefonte, PA, USA); Ultrasonic Cleaner was from Shanghai Kedao ultrasound Instrument Co., Ltd. (Shanghai, China); Organic microporous membrane (0.22 μm) was from Tianjin Jinteng test equipment Co., Ltd. (Tianjin, China); AL 204 electronic balance with sensitivity of 0.1 mg, SL-502N desktop balance with sensitivity of 0.01 g; Amino solid phase extraction column (60 mg/3 mL), C18 solid phase extraction column (1 g/6 mL), MAX (60 mg/3 mL), HLB (200 mg/6 mL) and PRIME HLB SPE solid phase extraction column (60 mg/3 mL) were from Waters Corporation (Milford, MA, USA).
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