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Shikimic

Manufactured by Merck Group
Sourced in Germany, United States, Switzerland

Shikimic is a biochemical compound that functions as a precursor in the biosynthesis of aromatic amino acids and other important organic molecules. It is an essential intermediate in the shikimate pathway, which is a metabolic route found in plants, bacteria, and some fungi. Shikimic serves as a core component in the production of various pharmaceuticals and chemical products, but a detailed description of its specific applications or intended uses is not provided here.

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9 protocols using shikimic

1

Quantification of Sugars, Organic Acids, and Phytochemicals

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The following standards were used for determination of sugars and organic acids: sucrose, fructose and glucose, as well as citric, malic, oxalic, tartaric and fumaric, ascorbic acid from Fluka Chemie (Buchs, Switzerland); shikimic and quinic acid from Sigma-Aldrich Chemicals (St. Louis, MO, USA). Standards for phenolic compounds were acquired from Sigma-Aldrich Chemicals (3-caffeoylquinic acid, 4-caffeoylquinic acid, 5-caffeoylquinic acid, luteolin-4'-O-glucoside, quercetin-3-O-rutinoside).
Zeaxanthin, chlorophyll a and b, β-carotene and lutein were from Sigma-Aldricht Chemie (Steinheim, Germany) and neoxanthin, violaxanthin, antheraxanthin and β-cryptoxanthin from DHI LAB Product (Hørsholm, Denmark). Methanol for the extraction of phenolics was obtained at Sigma-Aldrich Chemicals. The chemicals for the mobile phase were HPLC-MS grade acetonitrile, sulphuric acid and formic acid from Sigma-Aldrich Chemicals. Water for the mobile phase was double distilled and purified with a Milli-Q system (Millipore, Bedford, MA, USA).
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2

Quantification of Sugars and Organic Acids

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Sugars and organic acids were identified and quantified according to Hernández [15 (link)], with some modifications. Approximately 1 g of sample was diluted in 5 mL of phosphate buffer (pH 7.8), homogenized by Ultra-TurraxTM (IKA L004640, Staufen, Germany) for 1 min, and centrifuged at 15,000× g for 10 min. Finally, samples were filtered through a 0.45 μm Millipore filter. For the determination of the content of sugars and organic acids on samples, an HPLC (high-performance liquid chromatograph) Hewlett-Packard series 1100 (Hewlett-Packard, Wilmington, DE, USA) was used. The elution buffer consisted of 0.1% phosphoric acid with a flow rate of 0.5 mL/min.
Sugars and organic acids were isolated using a Supelco column (Supelcogel TM C-610H column 30 cm × 7.8 mm, Supelco, Inc., Bellefonte, PA, USA) and a precolumn Supelguard (5 cm × 4.6 mm; Supelco), and the absorbance was measured at 210 nm using a diode-array detector (DAD). Standards of sugars (glucose, fructose, sucrose, raffinose, maltitol, and sorbitol) and organic acids (oxalic, citric, tartaric, malic, quinic, shikimic, succinic and fumaric) were obtained from Sigma (Poole, UK). Calibration curves were used for the quantification of sugars and organic acids, showing good linearity (R2 = 0.999). Results for both organic acids and sugars were expressed as concentrations g/L of dry weight (dw).
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3

Phytochemical Analysis of Medicinal Plants

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Acetonitrile, formic acid, methanol, DPPH (1,1-diphenyl-2 picrylhydrazyl radical), Trolox (6-hydroxy-2,5,7,8-tetramethylchroman-2-carboxylic acid), TPTZ (2,4,6-tri(2-pyridyl)-s-triazine), acetic acid, phloroglucinol, arbutin, caffeic acid, betulinic, oleanolic and ursolic acid, fructose, glucose, sorbitol and sucrose, and malic, oxalic, citric, shikimic, succinic, and fumaric acids were purchased from Sigma-Aldrich (Steinheim, Germany). Quercetin 3-O-glucoside, kaempferol 3-O-glucoside, cyanidin 3-O-glucoside, isorhamnetin 3-O-glucoside, apigenin 7-O-glucoside, chlorogenic, quinic, p-coumaric and ferulic acids, (+)-catechin, and procyanidin B2 were purchased from Extrasynthese (Lyon, France). Sodium hydroxide (CAS 1310-73-2), iodine (CAS 7553-56-2), and potassium iodide (CAS 7681-11-0) were purchased from CHEMPUR (Piekary Slaskie, Poland).
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4

HPLC-MS Analysis of Carbohydrates and Organic Acids

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The chemicals for the sample extractions and for the mobile phases were HPLC-MS grade, methanol and phosphoric acid were purchased from Sigma-Aldrich (Burlington, MA, USA), while sodium hydroxide was purchased from J.T. Baker (Deventer, The Netherlands). HPLC grade carbohydrate standards (glucose, fructose, and sucrose), as well as citric and malic acid were procured from Fluka (Buchs, Switzerland), while shikimic and fumaric acid were purchased from Sigma-Aldrich (Burlington, MA, USA). All utilized solvents and chemicals for MS analysis were purchased from Merck Chemicals, Carl Roth or VWR Chemicals as HPLC (purity ≥ 99.9%) or analytical grade chemicals (purity ≥ 99%). Water for the mobile phase was double distilled and purified with the Milli-Q system (Millipore, Bedford, MA, USA).
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5

Quantitative Analysis of Organic Acids in Beetroot

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Organic acids were extracted from undigested and digested beetroot samples as previously described by Pereira et al. [25 (link)] and then analyzed in an ultra-fast liquid chromatography (UFLC) system coupled to a photodiode array detector (215 nm was the wavelength selected for the analysis). The detected compounds were identified by comparing the retention time and the UV-vis spectrum of the sample peaks with those of commercial standards of oxalic, quinic, malic, shikimic, citric acid, succinic, and fumaric acids (purchased from Sigma-Aldrich, St. Louis, MO, USA) in Figures S1 and S2, and then quantified (mg per 100 g fw of beetroot) by comparing peak areas with calibration curves constructed with the same standards. More details about the equipment and chromatographic method are described in Table S2.
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6

Analysis of Sugars, Organic Acids, and Phenolic Compounds

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For the determination of sugars and organic acids, we used the following standards: sucrose, glucose, fructose, tartaric, quinic, malic, citric, oxalic, shikimic and fumaric acid from Sigma-Aldrich (Steinheim, Germany). For phenolic compounds’ identification and calculation, the following standards were purchased: procyanidin B1, p-coumaric acid, epicatechin ferulic acid, catechin, quercetin-3-O-rutinoside, naringenin, quercetin-3-O-galactoside, quercetin-3-O-glucoside, quercetin-3-O-xyloside, kaempferol-3-O-glucoside and phloridzin from Fluka Chemie (Seelze, Germany), quercetin-3-O-arabinofuranoside from Apin Chemicals LTD (Compton, UK), isorhamnetin-3-O-glucoside from Extrasynthèse (Genay, France), and chlorogenic and caffeic acid, quercetin-3-O-rhamnoside, 3-O-caffeoylquinic acid, cyanidin-3-O-glucoside, pelargonidin-3-glucoside, cyanidin-3-O-rutinoside and 4-O-caffeoylquinic acid from Sigma-Aldrich. For the extraction of phenolic compounds, methanol from Sigma-Aldrich, double-distilled water purified with a Milli-Q system (Millipore, Bedford, MA, USA) and 3% formic acid from Fluka Chemie were used. The chemicals for the mobile phases were acetonitrile (HPLC-MS), formic acid, sulphuric acid and double-distilled water.
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7

Comprehensive Phytochemical Analysis

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Acetonitrile, formic acid, methanol, ABTS, Trolox Equivalents (6-hydroxy-2,5,7,8-tetramethylchroman-2-carboxylic acid), TPTZ (2,4,6-tris (2-pyridyl)-s-triazine), acetic acid, phloroglucinol, caffeic acid, betulinic, oleanolic and ursolic acid, fructose, glucose and sorbitol, malic, citric, shikimic, and fumaric acid, 15-cis-β-carotene, α-carotene, all-trans-Lutein and β-cryptoxanthin were purchased from Sigma-Aldrich (Steinheim, Germany).
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8

Characterization of Trixis lignosa Extracts

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Samples of T. lignosa, available as dried rosettes of leaves and inflorescences, were obtained from a local herbal shop in Bragança (North-eastern Portugal). Botanical identification of all plant materials used was previously confirmed. Amber Perspex routine dosimeters, Batch V, were purchased from Harwell Company (Oxfordshire, UK). Organic acids (oxalic, quinic, shikimic and succinic acids) and trolox (6-hydroxy-2,5,7,8-tetramethylchroman-2-carboxylic acid) were purchased from Sigma (St. Louis, MO, USA). Acetonitrile (99.9%, HPLC grade) was purchased from Fisher Scientific (Lisbon, Portugal). Formic acid was purchased from Prolabo (VWR International, France). The phenolic compound standards (apigenin-6-C-glucoside, p-coumaric acid, ellagic acid, gallic acid, kaempferol-3-O-glucoside, kaempferol-3-O-rutinoside, luteolin-6-C-glucoside, quercetin-3-O-glucoside and quercetin-3-O-rutinoside) were purchased from Extrasynthese (Genay, France). 2,2-Diphenyl-1-picrylhydrazyl (DPPH) was obtained from Alfa Aesar (Ward Hill, MA, USA). All other chemicals and solvents were of analytical grade and purchased from common sources. Water was treated in a Milli-Q water purification system (Merck Millipore, model A10, Billerica, MA, USA).
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9

Analytical Standards for Food Research

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Chemicals of analytical grade were used in all analyses. Sugar standards (sucrose, glucose, fructose, and sorbitol) and the sulfuric acid were purchased from Panreac Química, S.A. (Barcelona, Spain), while organic acids standards (citric, malic, oxalic, quinic, succinic, shikimic, and tartaric) were obtained from Sigma-Aldrich (Saint Louis, MO, USA).
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