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10 protocols using m9692

1

Detailed Immunostaining Protocol for Tissue Sections

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Immunostaining was performed essentially as previously described [120 (link)] using the following primary antibodies: anti-collagen II (DSHB II-II6B3-c, 1:200), rabbit anti-RFP (Abcam; ab62341, 1:200), chicken anti-GFP (Invitrogen; A10262, 1:300), mouse anti-p63 BC4A4 (Zytomend, 1:200), and mouse anti-MAP Kinase, activated (Sigma, M9692, 1:50). For pAkt staining, cryosections of EAF-fixed embryos were washed with PBS-TritonX, followed by an antigen retrieval in 10 mM Tris, 1 mM EDTA, pH 9.0 for 5 min at 98°C, blocking in 5% sheep serum and antibody incubation with rabbit anti-pAkt (S473) (Cell signaling #4060, 1:50) (modified after [121 (link)]). Secondary antibodies were anti-rabbitAlexa555, anti-mouseAlexa488, anti-mouseAlexa647, and anti-chickenAlexa488 (all Invitrogen, 1:200). Sections were mounted either directly in Mowiol containing DAPI or stained with a 1:1000 dilution of CellMask Deep Red Plasma membrane Stain (Molecular Probes) in PBS for 10 min and washed with PBS several times prior to mounting. Images were taken using a Zeiss Confocal (LSM710 META).
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2

Endogenous and Recombinant ERK1 Expression in Mouse Eggs

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To assess for the presence of endogenous and recombinant expression of ERK1, mouse eggs were collected in SDS buffer, heated for 5 min at 100°C and proteins were separated by SDS-PAGE (Nomikos et al., 2011 (link)). Immunoblotting was then performed as described previously (Verlhac et al., 1996 (link)). Following transfer onto polyvinylidene difluoride membrane (Immobilon-P; Millipore) using a semi-dry transfer system (Trans-Blot SD; Bio-Rad) in buffer (48 mM Tris-HCl, 39 mM glycine, 0.0375% SDS) at 22 V for 4 h and blocking overnight in 5% skimmed (low-fat) milk in TBS (10 mM Tris-HCl, pH 7.5, 140 mM NaCl) containing 0.1% Tween-20 (TBS/Tween), the membrane was incubated for 1 h with the appropriate primary antibody. ERK1 was detected using monoclonal antibody against diphosphorylated ERK1/2 (1∶1000, M9692 Sigma) and ERK1 (1∶500, G-8; sc-271269, Santa Cruz Biotechnology) antibodies. Detection of horseradish-peroxidase-coupled secondary antibody was achieved using enhanced chemiluminescence detection (ECL, Amersham Biosciences). All experiments were repeated at least three times.
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3

Antibody-Based Protein Phosphorylation Analysis

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Primary antibodies were sourced as follows: p-MYPT1 Ser-507, antibody 3040; p-MYPT1 Ser-668, antibody 3048; p-MYPT1 Thr-853, antibody 4563; p-MYPT1 Thr-696, antibody 5163; MYPT1, antibody 2634; p-RSK T359/S363, antibody 9344; p-RSK Thr-359, antibody 8753; p-RSK Ser-380, antibody 9341; pan-RSK, antibody 9355; RSK1, antibody 8408; RSK2, antibody 5528; p-AKT Ser-473, antibody 4060; AKT, antibody 9272; S6K, antibody 9202; p-S6 235/236, antibody 4858; S6, antibody 2317; p-p38, antibody 9211; ERK, antibody 9102 (CST); FLAG M5 and p-ERK, antibody M9692 (Sigma); HA.11 (Covance), ROCK1 antibody A300-455 and A300-457 (Bethyl); MLC, antibody ab92721; and p-MLC S20, antibody ab2480 (Abcam). 680LT and 800CW IRDye-labeled secondary antibodies were from Li-COR or Fisher. Membranes for phospho-MYPT1, MYPT1, and myosin antibodies were first blocked with 5% (w/v) BSA in TBS (10 mm Tris, pH 7.4, and 150 mm NaCl), followed by primary antibody incubation in a 1:2 mixture of Odyssey blocking buffer and TBS. All others were blocked with 5% nonfat dry milk in TBS. After incubation with primary and secondary antibodies, the membranes were washed with TBS-T (TBS with 0.1% Tween 20). Western blots were imaged on a Li-COR Odyssey Imager. Marker lanes visible in the 680 channel scans were overlaid onto the 800 channel scans.
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4

Immunostaining and Western Blot for GABA Receptor

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Mouse CaMKIIβ (1:1500 for Western blotting [WB] and 1:150 for in situ proximity ligation assay [PLA], ThermoFisher Scientific #13-9800, Basel, Switzerland), mouse GABAB1 (1:250 for immunofluorescence staining [IF] and, 1:100 for PLA; Abcam #ab55051), rabbit GABAB1bN directed against the N-terminus of GABAB1b (affinity-purified,1:100 for IF; custom made by GenScript), rabbit GABAB2N directed against the N-terminus of GABAB2 (affinity-purified, used for cell surface staining, 1:25 for IF; custom made by GenScript), rabbit GABAB2 (1:500 for IF, 1:100 for PLA, 1:800 for Western blotting; Abcam #ab75838, via Lucerna-Chem AG, Luzern, Switzerland), mouse phospho-serine (1:150 for PLA, Sigma-Aldrich #P5747), mouse phospho-threonine (1:150 for PLA, Millipore #708014, Darmstadt, Germany), rabbit ERK1/2 (1:500 for WB and IF, 1:100 for PLA, Sigma-Aldrich #M5670), mouse pERK1/2 (1:250 for WB and IF, Sigma-Aldrich #M9692), rabbit HA (1:500 for IF, Sigma-Aldrich #SAB5600116). For immunofluorescence staining, secondary antibodies used were labeled with Alexa Fluor Plus 488, 555, or 647 (1:2000, ThermoFisher), and for Western blotting, antibodies were conjugated to IRDye 700CW or IRDye800CW (LI-COR Biosciences, Bad Homburg, Germany).
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5

Western Blot Analysis of Hippocampal Proteins

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Mice were killed as described above and bilateral hippocampi were rapidly dissected out and then stored at −80 °C until use for western blotting as detailed in Supplementary Materials and Methods. Antibodies used were anti-ERK1/2 (1/5000; 05-1152, Millipore, Molsheim, France), anti-P-ERK1/2 at threonine 183 and tyrosine 185 (1/500; M9692, Sigma-Aldrich, Saint Quentin Fallavier, France), anti-AKT1/2/3 (1/1000; 9272S, Cell Signaling, Ozyme, Saint Quentin Yvelines, France), anti-P-AKT1/2/3 at serine 473 (1/1000; 4051S, Cell Signaling, Ozyme), anti-CREB (1/1000; 4820S, Cell Signaling, Ozyme), anti-P-CREB at serine 133 (1/1000; 9198S, Cell Signaling, Ozyme) or β-actin (1/500; SC-81178, Santa Cruz, Heidelberg, Germany). The relevant immunoreactive bands were quantified using ImageJ software (National Institutes of Health, Bethesda, MD, USA) and normalized with the total protein expression. Data normalized for each blot were expressed as percentage of ‘water' mice.
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6

Immunohistochemistry Antibody Staining Protocol

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The following primary antibodies were used for immunohistochemistry experiments with indicated final concentrations: mouse monoclonal anti-ppERK1/2 (M9692, 1:1000/1.5-2 μg/mL, Sigma), rabbit monoclonal anti-β-Catenin (#9562,1:200, CST), chicken monoclonal IgY anti-GFP (A10262, 5 μg/mL, Invitrogen), rat anti-HA (#3K10, 1:400, Roche), mouse anti-F59 Myosin Heavy Chain (AB528373, 1:10/ 0.2-0.5 μg/mL, DSHB), and rabbit anti-pFAK (44-624G, 1:400, Invitrogen). Primary antibodies were targeted with 1:200 dilutions of Alexa Fluor 488 goat anti-chicken IgG H+L (A11039, Invitrogen), Alexa Fluor 594 goat anti-mouse IgG H+L (A11005, Invitrogen), Alexa Fluor 647 goat anti-rabbit IgG (A21245, Invitrogen) or Alexa Fluor 647 goat anti-rat IgG H+L (A21247, Invitrogen) for corresponding primary species. Alexa Fluor 488 Phalloidin (A12379, 1:200, Thermo Fisher) was used against F-actin of muscle fibers.
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7

Immunofluorescence Assay for Nuclear Translocation of ERK1/2

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Immunofluorescence (IF) microscopy was used to determine the nuclear translocation of ERK1/2 (MAPK). Cells were cultured on a sterile coverslip in 3.4 cm diameter culture plates. After irradiation and incubation, the cells were fixed (4% paraformaldehyde, 15 min at room temperature), washed (0.1% Tween-20 in PBS), permeabilised (0.1% Triton X-100 in PBS, 15 min at room temperature), washed, and blocked (1% BSA in PBS, 1 h at room temperature). Cells were exposed to unlabelled (1:250) primary antibody (Anti-MAP Kinase, activated (Dephosphorylated ERK-1&2) antibody, mouse monoclonal; M9692, Sigma-Aldrich, Johannesburg, South Africa) and incubated for 1 h at room temperature. The slides were then washed, and fluorescently labelled secondary antibody diluted in PBS-T (1:100) (anti-mouse, IgG, H&L, FITC conjugate; 12-506, Sigma-Aldrich, Johannesburg, South Africa) was added and incubated for 1 h at room temperature in the dark. Thereafter, the slides were washed and nuclei counterstained with 1 µg/mL 4′,6′-diamidino-2-phenelendole (DAPI), mounted, and observed under a fluorescent microscope, Carl Zeiss Axio Z1 (Carl Zeiss, Randburg, South Africa). Images were analysed by using ZEN 3.1 (ZEN pro) software (Carl Zeiss, Randburg, South Africa).
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8

Western Blot Analysis of Cellular Proteins

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Cells were washed with PBS twice and lysed with the buffer. Lysates were resolved by SDS-PAGE and transferred to PVDF membrane (Millipore). Detection was achieved using horseradish peroxidase-conjugated secondary antibodies and Immobilon (Millipore). Antibodies were anti-GFP (mouse, JL-8, Clontech), anti-HA (rat, 3F10, Roche), anti-SIV Nef (mouse, sc-65911, Santa Cruz Biotech), anti-GAPDH (mouse, 6C5, Abcam), anti-phosphorylated Erk1/2 (mouse, M9692, Sigma-Aldrich), anti-Erk2 (rabbit, M7556, Sigma-Aldrich), and anti-cyclophylin B (rabbit, PA1-027A, ThermoFisher Scientific). Chemiluminescence signal was recorded by Odyssey Fc Imaging System (LI-COR) or by an exposure of the membrane to a X-ray film.
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9

Immunofluorescence Analysis of Cellular Proteins

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Immunoassays were performed by incubating with mouse anti-MAP kinase activated (Diphosphorylated ERK -1&2, cat. M9692, no. L089M4838V, Sigma-Aldrich), rabbit anti-vimentin (cat. HPA001762. no. LB114381, Sigma-Aldrich), or rabbit anti RAB11FIP5 primary antibodies (cat. HPA036407, no. LA104076, Sigma-Aldrich). Cells were then washed with PBS and incubated with Goat anti-Mouse IgG (H+L) Highly Cross-Adsorbed Secondary Antibody, Alexa Fluor −488 (cat. A11001, no. L12599373, Invitrogen), and Goat anti-Rabbit IgG (H+L) Highly Cross-Adsorbed Secondary Antibody, Alexa Fluor 555 (cat. A21429, Invitrogen). Finally, cells were examined with Olympus IX70 microscope by using a 40× oil objective lens; images were acquired by the ColorViewII digital camera and analyzed with the Olympus Soft Imaging Systems GmbH software, Münster, Germany.
Cell culture and immunofluorescence assays followed standard protocols. See Supplementary Methods for details and for antibody incubation description.
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10

Quantitative Analysis of Activated MAP Kinases

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S2 cells were collected into an ice-cold microcentrifuge tube containing 1 ml of anticoagulant buffer and immediately washed twice with anticoagulant buffer. Washed cells were solubilized by adding same volume of 2 × lysis buffer (100 mM HEPES-NaOH, 300 mM NaCl, 3 mM MgCl2, 1 mM EDTA, 20% glycerol, 2% TX-100 (w/v), 1% sodium deoxycholate, 0.2% SDS, pH 7.5) containing Protease inhibitor cocktail (Nacalai tesque, Japan), phosphatase inhibitor cocktail set II (Calbiochem, USA), and 0.2% phenylthiourea. After centrifugation at 17,000 g for 15 min at 4 °C, the supernatant was mixed with the same volume of sample buffer (125 mM Tris–HCl, 10% 2-mercaptoethanol, 4% SDS, 10% sucrose, 0.004% bromophenol blue) and separated by SDS–PAGE (8 or 10%), transferred onto an Immobilon-P PVDF membrane (Millipore, USA). Proteins on the membrane were probed with anti-activated MAP Kinase (diphosphorylated ERK-1&2) mouse monoclonal antibodies (at 1:2,000, M9692, Sigma-Aldrich, USA)38 (link). For reprobing, membranes were washed for 30 min at 50 °C in 62.5 mM Tris–HCl (pH 6.7) containing 100 mM 2-mercaptoethanol and 2% SDS, and they were probed with anti-MAP kinase (ERK-1&2) mouse monoclonal antibodies (at 1:2,000, M5670, Sigma-Aldrich, USA). All positive bands were quantified using ImageJ (NIH).
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