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4 protocols using psmb5

1

Antibody Characterization for Protein Analysis

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Antibodies used in this study were β-actin (#A5441) from Sigma-Aldrich, Cleaved Caspase 3 (#9661L) and RIP1 (#3493) from Cell Signaling, RIP3 (#2283) from ProSci, CYP2E1 (#Ab19140), p65 (#sc-372) from Santa Cruz Biotechnology, PSMA2 (#Ab109525) and PSMB5 (#Ab3330) from Abcam, PSMC1(#A303-821A) from Bethyl, anti-lymphocyte antigen B superfamily (Ly6B, #MCA771G) from AbD Serotec, MCL-1 (#600-401-394) from Rockland. Horseradish peroxidase—conjugated secondary antibodies were from Jackson ImmunoResearch Laboratory. Ethanol was from Pharmaco, RIP1 Inhibitor 7-Cl-O-Nec-1 (7-Nec1, 504297) from Calbiochem and all other chemicals were from Sigma, Invitrogen or Calbiochem.
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2

Immunoblotting of SWI/SNF Complex

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After indicated treatments, cell lysates were harvested using RIPA buffer (Cell Signaling Technologies) with protease inhibitors (cOmplete, Roche) and phosphatase inhibitors (PhosSTOP, Roche). Antibodies used were as follows: ARID1A (Santa Cruz; sc-373784), α-tubulin (Santa Cruz; sc-5286), β-Actin (C-4) (Santa Cruz; sc-47778), β-Actin (Cell Signaling; 8457), BAF57/SMARCE1 (Bethyl Laboratories, A300-810A), BAF60a (Santa Cruz; sc-135843), BAF155 (Cell Signaling; 11956), BAF170 (Santa Cruz; sc-166237), SMARCA4 (Santa Cruz; 17798), Cleaved Caspase-3 (Cell Signaling; 9664), c-MYC (Santa Cruz; sc-764) or c-MYC (Cell Signaling; 9402), cyclin B1 (Cell Signaling; 4135 and 4138), cyclin D1 (Santa Cruz; sc-718), GAPDH (Cell Signaling; 2118S and 97166S), GRP78 (Rockland Antibodies, Limerick, PA; 200–301 F36), IRE1-alpha (Cell Signaling; 3294), lamin A/C (Cell Signaling; 2032), PSMB5 (Abcam, Cambridge, MA; ab3330), SMARCB1/SNF5 (Bethyl A301-087A), UBE2C (Proteintech, Rosemont, IL; 66087–1). Results shown are representative of at least two biological replicates.
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3

Western Blot Analysis of Cellular Proteins

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Protein lysates were extracted and concentrations were determined using the DC assay (Bio‐Rad, Hemel Hempstead, UK) and 15 µg of protein was separated using a 10% bis‐tris gel and then transferred to a nitrocellulose membrane and probed with goat anti‐mouse E11 (1:1000, R&D Systems) and HRP‐linked rabbit anti‐goat secondary antibody (1:3,000, Dako, Cambridge, UK); or rabbit anti‐mouse proteasome subunit beta type‐5 (PSMB5) (1:1,000, Abcam) and HRP‐linked goat anti‐rabbit secondary antibody (1:3,000, Dako); or rabbit anti‐mouse RhoA (1:1,000, Cell signaling) and HRP‐linked goat anti‐rabbit secondary antibody (1:3,000, Dako) diluted in 5% non‐fat milk. Rabbit anti‐mouse ERM and phospho‐ERM (1:1000, Invitrogen) antibodies and HRP‐linked goat anti‐rabbit secondary antibody (1:3,000, Dako) were diluted in 3% bovine serum albumin.
Immune complexes were visualised by chemiluminescence using the ECL detection kit and ECL film (GE Healthcare, Amersham, UK). HRP‐conjugated anti β‐actin antibody (1:25,000, Sigma) was used as a loading control.
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4

Quantifying Protein Expression by Immunoblotting

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Cell cultures were treated with RIPA buffer. Protein extracts were separated in 12.5% sodium dodecyl sulfatepolyacrylamide gel electrophoresis (SDS-PAGE), transferred onto nitrocellulose membranes (Sigma) and immunoblotted with the antibodies against PSMB5 (Abcam) and actin ( Abcam). Protein bands were visualized with enhanced chemiluminescence (Millipore).
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