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Texas red 70 kda dextran

Manufactured by Thermo Fisher Scientific
Sourced in Canada, United States

Texas Red 70 kDa dextran is a fluorescent labeling compound used in various biological applications. It has a molecular weight of approximately 70,000 Daltons and is conjugated with the Texas Red fluorescent dye. This product can be used to label and track the movement or distribution of molecules, cells, or other biological entities in experimental research settings.

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8 protocols using texas red 70 kda dextran

1

Multimodal Imaging of Immune Cell Dynamics

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Imaging was performed on an FV1000MPE multiphoton laser scanning microscope (Olympus Corp., Japan) with an InSight DS tunable laser (Spectra-Physics, USA). A 25× water-immersion objective lens (XLPN25XWMP2, NA 1.05, WD 2 mm, Olympus Corp., Japan) was co-aligned with the ring transducer and water-coupled for imaging at lateral and axial resolutions of 0.994 μm/pixel and 2 μm/slice, respectively, and at an imaging speed of 2-8 μs/pixel for a maximum imaging duration of 4 h. Texas Red 70 kDa dextran (dissolved in PBS, 5 mg/kg; Invitrogen, Canada) was injected through a tail vein catheter for visualization of vasculature. EGFP cells and Texas Red dextran were excited at 900 nm. Fluorescent emissions were collected with photomultiplier tubes preceded by the following bandpass filters: 575-645 nm for Texas Red and 495-540 nm for EGFP.
After administration of Texas Red dextran, XYZT image stacks (XY: 0.994 μm/pixel, typically 512 × 512 pixels; Z: 2 μm/slice, 6-10 slices) were acquired to assess baseline immune cell dynamics. Regions-of-interest (ROIs) were centred on blood vessels that showed increased permeability following FUS+MB treatment. Imaging duration ranged from 2-4 h and was limited by increased noise from fluorescent cells reacting to the acute cranial window in the superficial layers of the cortex.
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2

In Vivo Multiphoton Imaging of Mammary Tumors

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Multiphoton imaging of mammary tumors was done as described previously [56] . MDA-MB-231 cells labeled with Dendra2- or cortactin-GFP were injected into the mammary fat pads of 5–7 week old SCID mice. After 10–12 weeks, we injected Texas Red 70 kDa dextran (250 nmol in 100 µl PBS per injection) [5] (link) for macrophage labeling and performed skin flap surgery 2 h later on anesthetized animals. Exposed mammary tumors were positioned on top of a coverslip on an inverted microscope and imaged continuously using a custom-built two-laser multiphoton microscope for up to 3–5 h. In some experiments, additional tail-vein injections were done for blood vessel labeling using Texas Red 70 kDa dextran (Invitrogen; 250 nmol in 100 µl PBS per injection), MMPSense 680 (Perkin Elmer; 2 nmol in 150 µl PBS per injection), SR-FLIVO (Immunochemistry Technologies; 1∶10 dilution, 2 h prior to imaging), or the pan-MMP inhibitor GM6001 (Milipore; 1 µmol in 100 µl injection). A stock solution of GM6001, 500 mM in DMSO, was diluted in sterile PBS before tail vein injection. Post-surgical injection assures that compounds are only present in tumor blood vessels that are intact, connected to tumor vasculature and flowing at the time of injection.
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3

Perfusion Assay of 3D Cell Aggregates

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Cell aggregates including A549 spheroids, triculture aggregates grown in traditional FA, hFLO cell aggregates, and vhFLO cell aggregates were grown until 14 days post seeding. Capillary fluidic flow was modeled using PTFE tubing (AO-06417–21, Cole-Palmer, IL, USA), a peristaltic pump (61161–354, VWR, PA, USA), and a 3D-printed biocompatible 4-well chip based on our previously published methodology [35 ]. Prior to the experiment, the fluidic system was flushed with DMEM/F12 media and the peristaltic pump was then calibrated manually to 1 mL min−1well−1. Afterwards, 20 μg mL−1 Texas Red™ 70 kDa dextran (D1864, Invitrogen, MA, USA) was perfused through the system to replace the media. 14-day old cell aggregates were then transferred into the 3D-printed microwell devices. To seal high-flow devices, glass slides wrapped with parafilm were carefully clamped onto the 3D printed chips. Dextran solution was perfused cyclically for 1 h, after which cell aggregates were collected and rinsed with PBS thrice for 5 min each to remove unbound dextran. They were then fixed in 1% PFA overnight at 4 °C. The cell aggregates were then counterstained with DAPI and processed for whole-mount immunofluorescence as described above.
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4

Quantifying Blood-Brain Barrier Integrity

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BBB integrity was assessed by IgG immunostaining with minor modifications [23 (link)] and Texas Red® (Invitrogen, Carlsbad, CA, USA) dextran perfusion [24 (link)]. Free-floating sections were incubated with biotinylated horse anti-mouse IgG (BA-2000, 1:500, Vector Laboratories) at 4°C overnight following blocking in 10% normal horse serum and 1% BSA in PBS, pH 7.4. After rinsing in 0.3% H2O2 for 30 minutes to quench endogenous peroxidase activity, sections were incubated with avidin-biotin horseradish peroxidase complex (ABC, Vector Laboratories) for 30 minutes, then visualized with DAB. Using ImageJ, the extent of BBB damage was quantified as the percentage of area of IgG positive staining per ipsilateral hemisphere. For Texas Red dextran perfusion, mice were deeply anesthetized with isoflurane, and Texas Red dextran 70 kDa (D1864, Invitrogen) in PBS (50 mg/ml) was injected into the inferior vena cava for 2 minutes of circulation. Mice were immediately killed by decapitation. Brains were quickly extracted and post-fixed in 4% PFA for 24 hours then cryoprotected by 30% sucrose for 48 hours. After O.C.T. embedding, brains were cut coronally in 20-μm sections. Slices were directly coverslipped using mounting media with 4′,6-diamidino-2-phenylindole (DAPI) (H-1200, Vector Laboratories).
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5

Monoclonal Antibody and Cell Culture Reagents

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Monoclonal hemagglutinin (HA) antibody, rat platelet-derived growth factor-BB, cell culture grade glutamine and penicillin-streptomycin were all from Sigma-Aldrich (St. Louis, MO). Monoclonal c-myc (9E10) antibody was from Roche Applied Science (Indianapolis, IN). FuGENE 6 transfection reagent was from Roche Diagnostics (Indianapolis, IN). AlexaFluor 488- and 594-conjugated secondary antibodies, AlexaFluor 594- conjugated phalloidin, and Texas-Red dextran (70 kDa) were from Invitrogen (Carlsbad, CA). Horseradish peroxidase-conjugated anti-rabbit and anti-mouse secondary antibodies were from Jackson ImmunoResearch Laboratories, Inc. (West Grove, PA). Matrigel was from BD Biosciences.
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6

Synchronizing PCR and IVT Droplets

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PCR droplets were reinjected and spaced into a fusion device at a rate of ≈1500 droplets/s. Measuring the fraction of droplets with an increased EvaGreen fluorescence allowed assessing droplet occupancy. Each PCR droplet was then synchronized with a 16 pl in vitro transcription (IVT) droplet containing 2.2 mM of each NTP (Larova), 24 mM MgCl2, 44 mM Tris-HCl pH 8.0, 5 mM DTT, 1 mM Spermidine, 35 μg/ml of Dextran-Texas Red 70 kDa (Molecular Probes), 0.1% Pluronic F68, 20 μg/ml T7 RNA polymerase, 200 μM DFHBI (Lucerna), 1 μg inorganic pyrophosphatase (Roche) and 50 mM NaCl or KCl. IVT mixture was loaded in a length of PTFE tubing kept on ice during all experiment. PCR droplets were spaced and IVT droplets produced using a single stream HFE 7500 fluorinated oil (3M) supplemented with 2% (w/w) of fluorinated. Flow-rates (MFCS, Fluigent) were adjusted to generate 16 pl IVT droplets and maximize synchronization of 1 PCR droplet with 1 IVT droplet. Pairs of droplets were then fused with an AC field (350 V at 30 kHz) and the resulting emulsion collected off-chip and incubated for 2 h at 37°C.
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7

Droplet-based In Vitro Transcription

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PCR droplets were reinjected into a droplet fusion device (Supplemental Fig. S4) and spaced with HFE 7500 fluorinated oil supplemented with 2% (w/w) of fluorinated surfactant. In parallel, 16 pL (∼2 kHz) droplets were produced on-chip using the same oil stream and an aqueous phase of in vitro transcription (IVT) mixture containing: 2 mM of each NTP, 25 mM MgCl2, 40 mM Tris–HCl, pH 8.0, 50 mM NaCl, 5 mM DTT, 1 mM spermidine, 20 µg/mL Dextran-Texas Red 70 kDa (Molecular Probes), and 0.4 units/µL T7 RNA polymerase (New England Biolabs). The IVT mixture was loaded in a length of PTFE tubing kept on ice and both droplet production (volume calculated as above) and fusion events were monitored using orange fluorescence, and flow rates were adjusted to generate 16 pL IVT droplets and maximize 1 to 1 PCR/IVT droplet pairing while limiting 2 to 1 PCR/IVT droplet pairing. Pairs of droplets were electrocoalesced (Chabert et al. 2005 (link); Mazutis et al. 2009a (link)) by passing between a pair of built-in electrodes to which an electric field of 350 V AC (30 kHz) was applied using a high voltage amplifier (Model 623b, Trek). The emulsion was collected in a 0.5 mL PCR tube closed by a PDMS plug and incubated at 37°C for 30 min to allow gene transcription to occur.
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8

Droplet-based Mutant Library Screening

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DNA mutant libraries were diluted in 200 μg/ml yeast total RNA solution (Ambion) down to ≈8 template DNA molecules per picoliter. 1 μl of this dilution was then introduced in 100 μl of PCR mixture containing 20 pmol of each primer (Fwd and Rev), 0.2 mM of each dNTPs, 0.67 mg/ml Dextran-Texas Red 70 kDa (Molecular Probes), 0.1% Pluronic F68, 1x EvaGreen (Biotium), 5 U of DreamTaqTM and the corresponding buffer (Fermentas). The mixture was loaded in a length of PTFE tubing and infused into droplet generator microfluidic chip where it was dispersed in 2.5 pl droplets (production rate of ≈12 000 droplets/s) carried by HFE 7500 fluorinated oil (3M) supplemented with 3% of a fluorosurfactant (29 (link)). Droplet production frequency was monitored and used to determined droplet volume, and pumps flow rates (MFCS, Fluigent) adjusted to generate 2.5 pl droplets. Emulsions were collected in 0.2 μl tubes as described before (29 (link)) and subjected to an initial denaturation step of 1 min at 95°C followed by 30 cycles of: 1 min at 95°C, 1 min at 55°C, 2 min at 72°C. Droplets were then reinjected into a droplet fusion microfluidic device.
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