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3 protocols using tetraethylammonium bromide teab

1

Protein Digestion and Purification

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For digestion, the protein solution was reduced with 5 mM dithiothreitol (Sigma‐Aldrich) for 30 min at 56 °C and alkylated with 11 mM iodoacetamide (Sigma‐Aldrich) for 15 min at room temperature in darkness. The protein sample was then diluted by adding 100 mM Tetraethylammonium bromide (TEAB, Sigma‐Aldrich) to urea concentration less than 2 M. Finally, trypsin (Promega) was added at 1:50 trypsin‐to‐protein mass ratio for the first digestion overnight and 1:100 trypsin‐to‐protein mass ratio for a second 4 h digestion. Finally, the peptides were desalted by the C18 SPE column.
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2

Protein Extraction and Trypsin Digestion

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Protein extraction and trypsin digestion were performed as described by Lu et al. (2022) with minor modifications. Briefly, frozen samples (n=3 for each season) were fully powdered under liquid nitrogen and then sonicated in lysis buffer (8 mol/L urea (Sigma-Aldrich, USA), 1% protease inhibitor (Merck Millipore, USA), and 1% phosphatase inhibitor (Millipore, USA); w:v=1:4), followed by centrifugation at 12 000 ×g for 10 min at 4 °C. Supernatants were collected to determine protein concentration using a BCA kit (Beyotime Biotechnology, China). Supernatants were added to 20% (w:v) trichloroacetic acid (TCA) (Sigma-Aldrich, USA), followed by incubation at 4 °C for 2 h. After centrifugation at 4 500 ×g for 5 min at 4 °C, the precipitates were collected and washed three times with cooled acetone, then dissolved in 200 mmol/L tetraethylammonium bromide (TEAB) (Sigma-Aldrich, USA). For digestion, trypsin (Promega, USA) (w:w=1:50) was added and left overnight. Samples were then reduced with 5 mmol/L dithiothreitol (Sigma-Aldrich, USA) for 60 min at 37 °C and alkylated with 11 mmol/L iodoacetamide (Sigma-Aldrich, USA) for 45 min at room temperature in darkness. Finally, the peptides were desalted using a Strata X SPE column (Dr. Maisch GmbH, GER) and vacuum-dried.
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3

Protein Sample Preparation for Mass Spectrometry

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Urea, DL-dithiothreitol (DTT), iodoacetamide (IA), IPG buffer and formic acid (FA) were purchased from GE Healthcare. SDS, Tris-(hydroxymethyl)-amino-methane, trichloroacetic acid, ammonium persulfate and N,N,N',N'-tetramethylethylenediamine were purchased from Amresco. Tetraethyl-ammonium bromide (TEAB) and Coomassie brilliant blue G-250 were obtained from Sigma-Aldrich (Merck KGaA). Trypsin was from Promega Corp. and acetonitrile (ACN; HPLC grade) and H2O were purchased from Thermo Fisher Scientific, Inc.
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