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8 protocols using glacial acetic acid

1

Membrane Protein Solubilization and Separation

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Membrane protein was solubilised in 1× NuPAGE® LDS sample buffer (0.025 mol/L Tris pH 8.5, 0.5% LDS, 2.5% glycerol, 0.05 mol/L dithiothreitol (DTT), 0.05 mol/L SERVA Blue G250, 0.04 mmol/L phenol red). Fifty μg of protein from each sheep was loaded in duplicate lanes on Bolt 4–12% Bis-Tris gels. Proteins were separated in a NuPAGE® MOPS running buffer system (Invitrogen, CA, USA) at a constant 200 V using a mini gel tank (Life technologies, CA, USA). Gels were stained with 0.1% coomassie brilliant blue (CBB R250) in 50% methanol (Chem–supply, SA, Australia) and 10% glacial acetic acid (Chem–supply, SA, Australia), then destained in 40% methanol and 10% glacial acetic acid. Gel images were obtained using a gel doc system (BioRad, CA, USA). Each gel lane was then cut into 9 pieces prior to protein digestion with trypsin and elution from gel piece.
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2

Chitosan-Rose Bengal Nanoparticles for ROS Detection

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Rose bengal (4,5,6,7-tetrachloro-2′,4′,5′,7′-tetraiodofluorescein disodium salt), EDC [N-(3-Dimethylaminopropyl)-N′-ethylcarbodiimide hydrochloride], low molecular weight chitosan (MW = 50–190 kDa, deacetylation degree = 75%), and sodium tripolyphosphate (TPP) were purchased from Sigma-Aldrich (Sydney, Australia). DCFDA/H2DCFDA-cellular ROS Assay Kit ab113851 was purchased from Abcam (Cambridge, UK). Glacial acetic acid was sourced from Chem-Supply (Gillman, SA, Australia). NaOH pellets were purchased from PanReac ApplyChem (Barcelona, Spain). All chemicals and reagents were of the highest purity grade commercially available. Deionised water (18.2 MΩ, 25 0 °C) was collected from a Milli-Q Advantage A10 water purification system and used to make sample solutions.
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3

Photodynamic Therapy Nanoparticle Synthesis

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Rose Bengal (4,5,6,7-Tetrachloro-2′,4′,5′,7′-tetraiodofluorescein disodium salt), low molecular weight chitosan (MW = 50–190 kDa, deacetylation degree~75%) and sodium tripolyphosphate (TPP) were purchased from Sigma-Aldrich (Sydney, NSW, Australia). Glacial acetic acid was sourced from Chem-Supply (Gillman, SA, Australia). NaOH pellets were purchased from PanReac ApplyChem (Barcelona, Spain). 1,3-diphenylisobenzofuran (DPBF) and dimethylformamide (DMF) were purchased from Sigma-Aldrich (Sydney, NSW, Australia). The singlet Oxygen Sensor Green (SOSG) kit was purchased from Thermo Fisher (Sydney, NSW, Australia). All chemicals and reagents were of the highest purity grade commercially available. Deionised water (18.2 MΩ, 25 °C) was collected from a Milli-Q Advantage A10 water purification system and used to make sample solutions.
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4

Chitosan-Rose Bengal Nanoparticles for ROS Detection

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Rose bengal (4,5,6,7-tetrachloro-2′,4′,5′,7′-tetraiodofluorescein disodium salt), EDC [N-(3-Dimethylaminopropyl)-N′-ethylcarbodiimide hydrochloride], low molecular weight chitosan (MW = 50–190 kDa, deacetylation degree = 75%), and sodium tripolyphosphate (TPP) were purchased from Sigma-Aldrich (Sydney, Australia). DCFDA/H2DCFDA-cellular ROS Assay Kit ab113851 was purchased from Abcam (Cambridge, UK). Glacial acetic acid was sourced from Chem-Supply (Gillman, SA, Australia). NaOH pellets were purchased from PanReac ApplyChem (Barcelona, Spain). All chemicals and reagents were of the highest purity grade commercially available. Deionised water (18.2 MΩ, 25 0 °C) was collected from a Milli-Q Advantage A10 water purification system and used to make sample solutions.
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5

Comprehensive PFAS Analysis Protocol

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All reagents used for sample preparation and the mobile phases were of analytical or LC-MS grade. Ultra-pure water (18.2 MΩ cm) was obtained from a Sartorius 611 arium® pro water generation system (Sartorius Lab Instruments GmbH & Co. KG, Goettingen, Germany). LC-MS grade LiChrosolv® methanol and analytical grade ammonium acetate were obtained from Sigma-Aldrich (St Louis, MO, U.S.).
An analytical standard (2 mg L -1 ) containing 24 PFAS with carbon chain lengths of C4-C13 perfluroalkylcarboxylic acids, C4-C10 perfluroalkylsulfonates, FOSA, N-MeFOSAA, N-EtFOSAA perflurooctanesulfon-(amide & amidoacetic acids) as well as 4:2, 6:2 and 8:2 fluorinated telomer acids was purchased from Wellington Laboratories (Guelph, Ontario, Canada). Sodium hydroxide, sodium chloride, ammonium hydroxide were purchased from Sigma-Aldrich (Castle Hill, Australia) and glacial acetic acid from Chem-Supply (Gillman, Australia). PTFE free sample tubes and vials made of polypropylene were used to avoid contamination [30] .
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6

Chitosan-based Nanoparticle Formulation

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Low molecular weight chitosan (MW 50e190 kDa), sodium tripolyphosphate (TPP), phosphate buffered saline (PBS) tablets, polyvinyl alcohol (PVA, MW 31e50 kDa), D-a-Tocopherol polyethylene glycol 1000 succinate (TPGS), tetraethyl orthosilicate (TEOS), L-lysine and citric acid monohydrate were purchased from Sigma-Aldrich (Castle Hill, NSW, Australia). Glacial acetic acid, cetyltrimethyl ammonium bromide (CTAB), potassium dihydrogen orthophosphate, disodium hydrogen orthophosphate and sodium hydroxide pellets were provided by Chem-Supply (Gillman, SA, Australia). Hydrochloric acid 37% (HCl) and hexane were sourced from RCI Labscan (Bangkok, Thailand). Methanol (MeOH) and ethyl acetate were obtained from Merck Millipore (Bayswater, VIC, Australia). Hanks buffered saline solution (HBSS) was purchased from Thermo Fisher Scientific (Scorseby, VIC, Australia).
Ethylenediaminetetraacetic acid disodium (EDTA) 0.2% was purchased from MP Biomedicals (Seven Hills, NSW, Australia). Poly(lactide-co-glycolide) (MW 45 kDa) was purchased from Hangzhou Dayangchem Co. Ltd (Hangzhou, Zhejiang, China). Fluorescein isothiocyanate conjugated ovalbumin (FITC-OVA) was kindly provided by Dr Shasha Rao (University of South Australia, SA, Australia).
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7

Characterization of Chlorination Agents

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Amino acids (alanine, arginine, asparagine, aspartic acid, cysteine, glutamine, glycine, glutamic acid, histidine, isoleucine, leucine, lysine, methionine, phenylalanine, proline, serine, threonine, tyrosine and valine) (purity ≥ 97%); amines (dimethylamine, diethylamine and ethanolamine) (purity ≥ 97%); amides (acetamide and acrylamide) (purity ≥ 97%); and aqueous sodium hypochlorite (10 -15 % chlorine) were purchased from Sigma Aldrich (New South Wales, Australia). The amino acid taurine (purity 99%); was purchased from AK Scientific (California, USA); potassium iodide and formic acid (purity 99%) were purchased from Ajax FineChem (New South Wales, Australia); and glacial acetic acid was purchased from Chem Supply (South Australia, Australia). Monochlor was produced using an ion exchange system (IBIS Technology, Western Australia, Australia), followed by an Elga Purelab Ultra system with a 0.2 μm filter (Elga, High
Wycombe, UK).
The concentration of sodium hypochlorite in the standard chlorination solution was confirmed by measuring the UV absorbance at 292 nm using a Cary 60 UV-Vis spectrometer from Agilent Technologies (California, USA) with a deuterium arc lamp. A molar absorptivity of sodium hypochlorite of 350 M -1 cm -1 (Morris 1966) was assumed.
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8

Analytical Characterization of Ibuprofen Formulation

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The drug of interest, ibuprofen (IBU) ($98%, GC), and internal standard flufenamic acid (ISTD) (analytical grade) were purchased from Sigma Aldrich (Castle Hill, Australia). Commercially available Nurofen tablets (Reckitt Benckiser, Sydney, Australia) were crushed into a uniform powder before use. The lipid, Capmul PG8 (propylene glycol caprylate), was sourced from Abitec (Columbus, OH). Glacial acetic acid (analytical grade) was purchased from Chem-Supply (Gillman, Australia). Silica nanoparticles (Aerosil 300 Pharma), with a surface area of 300 6 30 m 2 /g were donated by Evonik (Melbourne, Australia). Nanoporous silica microparticles (Parteck SLC 500), with a 9-11 mm particle size and 6 nm pore size, were donated by Merck (Bayswater, Australia). Soybean lecithin and liquid chromatography grade methanol were purchased from Merck. Heparin sodium (5000 IU/5 ml) was purchased from Pfizer (Perth, Australia). High purity Milli-Q water was acquired from a Milli-Q water purification system (Merck).
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