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Nis element 4

Manufactured by Nikon
Sourced in Japan

NIS Element 4.0 is a comprehensive software package for image acquisition, analysis, and management. It provides a powerful and flexible platform for researchers and scientists working with various microscopy techniques, including confocal, widefield, and high-content imaging. The software offers a range of tools and features to streamline the imaging workflow, from image capture to data processing and export.

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5 protocols using nis element 4

1

Bimolecular Fluorescence Complementation of ChiLCV and NbPI4KII

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Bimolecular fluorescence complementation assay (BiFC) was performed using pSPYNE, and pSPYCE vectors were obtained from the Arabidopsis Biological Resource Center. The ChiLCV ORF C1 was amplified using forward primer 5′‐GGTACCGCCATCGATTTGGAAAACTCC‐3′ and reverse primer 5′‐GGTACCATAAACCTCCAACGGAGGTG‐3′, and cloned into the pSPYCE vector at KpnI and XhoI sites. Similarly, NbPI4KII was amplified using forward primer 5′‐GTCGACATGTCGAGGAACTTAGACAGT‐3′ and reverse primer: 5′‐CCCGGGTCAAAACTGGCATGAAGTGCC‐3′, and cloned into the pSPYNE vector at the SalI and XmaI sites. The pSCPYCE‐Rep, pSPYNE‐NbPI4KII constructs were transformed into A. tumefaciens strain GV2260. BiFC assay was done by co‐infiltration of pSPYCE‐REP with pSPYNE‐NbPI4KII into the lower epidermis of N. benthamiana following Kushwaha et al. (2017). In vivo expression was observed under a confocal microscope (Model Eclipse TiE, Nikon, Tokyo, Japan). NIS‐Element 4.0 software (Nikon, Tokyo, Japan) was also used to subtract the background signals.
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2

Bimolecular Fluorescence Complementation for Protein-Protein Interactions

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A bimolecular fluorescence complementation assay (BiFC) was performed using pSPYNE, and pSPYCE vectors that were obtained from the Arabidopsis Biological Resource Center [85 (link)]. The ORF C1 of ChiLCV was amplified using primer pair no. 10 (S2 Table) and cloned into the pSPYCE vector at KpnI and XhoI sites. NbHUB1 was amplified using primer pair no. 6 (S2 Table) and cloned into the pSPYNE vector at the KpnI and SalI sites. NbUBC2 was cloned into the pSPYNE vector at the KpnI and BamHI sites using primer pair no. 28 (S2 Table). The NbH2B sequence was amplified using primer pair no. 27 (S2 Table) and cloned into the pSPYCE vector at the KpnI and BamHI sites. The pSCPYCE-Rep, pSPYNE-NbUBC2 and pSPYNE-NbHUB1 constructs were transferred into A. tumefaciens strain GV2260 as previously described. For the BiFC assay, pSPYCE-REP with pSPYNE-NbUBC2, pSPYCE-REP with pSPYNE-NbHUB1, and pSPYCE-NbH2B with pSPYNE-NbHUB1 were co-infiltrated onto the lower epidermis of N. benthamiana. In vivo expression was observed under a confocal microscope (Model Eclipse TiE, Nikon, Tokyo, Japan). NIS-Element 4.0 software (Nikon, Tokyo, Japan) was used to subtract the background signals.
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3

Neuromuscular Junction Visualization

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Twenty-micrometre sections were obtained by cutting isopentane fresh-frozen tibialis anterior muscle perpendicular to the muscle axis with a cryostat at −20 °C (Leica, Nanterre, France). Acetylcholine receptors in the postsynaptic apparatus of neuromuscular junctions were labelled with rhodamine-conjugated α-bungarotoxin (Sigma–Aldrich). Gangliosides distribution was labelled with the cholera toxin sub-unit beta coupled with an Alexa488 dye (1/200, ThermoFisher). Photomicrographs were taken with a Nikon microscope and analysed with NIS Element 4.0 (Nikon).
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4

Quantifying Motor Neurons in Spinal Cord

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Lumbar segments L2-L3 fixed in paraformaldehyde 4% were used for studying the number of motor neurons innervating tibialis anterior muscle83 (link). Coronal sections 40 µm thick from L2-L3 spinal segment were realized with a vibratome and were stained with an anti-choline acetylcholine transferase (1/100, Millipore, France) and an alexa594 conjugated goat (1/200, Jackson) antibodies. All neurons located in the ventral horn, that were >400 µm2 in size and ChAT positive were considered as alpha motor neurons. Six sections of spinal cord that were apart over a length of 0.24 mm were counted. Photomicrographs were taken with a Nikon microscope and cell area of motor neurons was measured with NIS Element 4.0 (Nikon).
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5

Immunofluorescence Staining on Collagen-coated Coverslips

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Cells were cultivated on collagen-coated coverslips and fixed with 50:50 methanol/acetone. Subsequently, coverslips were incubated at 4°C for 2 hours in PBS. Nonspecific binding was blocked by incubation in blocking buffer [10% (v/v) goat serum, 10% (w/v) bovine serum albumin in PBS] for 1 hour. Antibody incubation was performed for 2 hours, followed by extensive washing steps in 0.02% (v/v) Tween-PBS. DAPI staining was performed for 2 min, followed by washing with deionized H2O. Coverslips were mounted on microscope slides with ProLong Gold Antifade Reagent (Life Technologies) and dried overnight at room temperature. Samples were analyzed using a Nikon Eclipse TS100 microscope. Data analysis was performed with NIS-Element 4.0 (Nikon).
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