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9 protocols using m csf 416 ml

1

Isolation and Culture of Mouse Macrophages

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Wild-type C57BL/6 mice were purchased from Samtako Bio Korea (Gyeonggi-do, Korea). Primary bone marrow–derived macrophages (BMDMs) were isolated from C57BL/6 mice and cultured in DMEM for 3–5 d in the presence of M-CSF (416-ML, R&D Systems; NE Minneapolis, MN, USA), as described previously (47 (link)). HEK293T (ATCC-11268, American Type Culture Collection; Manassas, VA, USA) cells were maintained in DMEM or RPMI1640 (Gibco, NY, USA) containing 10% FBS (Gibco, NY, USA), sodium pyruvate, nonessential amino acids, penicillin G (100 IU/ml), and streptomycin (100 μg/ml). All animal-related procedures were reviewed and approved by the Institutional Animal Care and Use Committee of the Hanyang University (protocol 2020-0060).
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2

Xanthohumol Modulates RANKL-induced Osteoclastogenesis

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Xanthohumol (XN), TRIS, Glycine, NaCl, sodium dodecyl sulfate (SDS), and bovine serum albumin (BSA) was obtained from Sigma (St Louis, MO, USA). RAW264.7 cells were the kind gift from Dr Bryant G Darnay (The University of Texas MD Anderson Cancer Center, TX, USA). Penicillin, streptomycin, a-MEM, and fetal bovine serum (FBS) were obtained from Invitrogen (Calbard, CA, USA). NFATc1 antibody is brought from Santa Cruz Biotechnology. All of the other antibodies were bought from Cell Signaling Technology. Bacteria-derived recombinant mouse RANKL (462-TEC) and M-CSF (416-ML) were from R&D Systems.
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3

Osteoclast Differentiation from Bone Marrow Macrophages

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Bone marrow macrophage from tibia and femur of WT and cKO mice were prepared as previously described (He et al., 2019 (link)). BMMs were then seeded on to 96-well plate (6 × 103 cells/well) and cultured in α-MEM supplemented with 30 ng/mL M-CSF (416-ML, R&D system, Minneapolis, MN, United States), and 100 ng/mL RANKL (462-TEC, R&D system). The media was replaced every 2 days and after 7 days of culture the cells were fixed and stained with Acid Phosphatase Staining kit (387A, Sigma-Aldrich, St. Louis, MO, United States) according to the protocol of the manufacturer. TRAP positive multinucleated cells with more than three nuclei were counted as OCs.
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4

Osteoclast Differentiation Assay

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M-CSF (416-ML) and RANKL (462-TEC) were purchased from R&D Systems. Staurosporine was purchased from MedChemExpress (HY-15141). MitoTracker Green (C1048), LysoTracker Red (C1046), enhanced mitochondrial membrane potential assay kit with JC-1 (C2003S), ATP assay kit (S0026) and a ROS assay kit (S0033S) were purchased from Beyotime. An Annexin V-FITC/PI apoptosis detection kit and cells genomic DNA extraction kit were purchased from Solarbio (CA1020). Following anti-bodies were used in our experiments: anti-Fbxo7 antibody (GeneTex #GTX65829), anti-Bpgm antibody (Santa Cruz #sc-373819), anti-TOM antibody (Proteintech #11802-1-AP), anti-SQSTM1/p62 antibody (Affinity #AF5384), anti-BNIP3 antibody (Affinity #DF8188), anti-PINK1 antibody (Affinity #DF7742), anti-LC3B antibody (Affinity #AF4650), anti-APG5L/ATG5 antibody (Affinity #DF6010), anti-DC-STAMP antibody (ABclonal #A14630), anti-CTSK antibody (Proteintech #11239-1-AP), anti-NFATc1 antibody (CST #8032),anti-TRAP antibody (Abcam #ab191406).
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5

Comprehensive Reagents for Cell Death

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Pan-caspase inhibitor, z-VAD-fmk (#A1902) was obtained from ApexBio (Houston, USA). Lactacystin (L6785), MG132 (C2211), cyclohexamide (C4859), hydroxychloroquine (H0915), and ultrapure LPS (E. coli 0111:B4, L3024) were obtained from Sigma-Aldrich (Oakville, Canada). Necroatatin-1 (9037) was obtained from Sigma Chem Co. (Oakville, Canada). M-CSF (416-ML) and TNFα (410-MT) were obtained from R&D (Minneapolis, USA). Birinapant (S7015) was obtained from Selleckchem (Houston, USA). GSK843 and GSK'872 (AOB4898, AOB488) were obtained from Aobious (Gloucester, USA). Caspase-8 Inhibitor, z-IETD-FMK (064-20C) was obtained from BioVision (San Francisco, USA). P38 inhibitor (5633S) was obtained from Cell Signaling (Danvers, USA). Alkaline Phosphatase, Calf Intestinal (CIP) (M0290, NEB). Protease inhibitors (04693132001) were obtained from Roche Applied Science (Laval, Canada). PR-619 (SI9619), 1,10-phenanthroline (SI9649) and GST-tagged tandem ubiquitin-binding entities (TUBE) (UM102) were obtained from LifeSensors (Malvern, USA). Actinomycin-D (0219452505) was obtained from MP Biomedicals (Solon, USA). Necrostatin-1s (cat# 504297) and MG341 (Bortezomib) (cat# 504314) were obtained from Calbiochem (San Diego, CA, USA). Zombie Yellow™ Fixable Viability Kit cat# 423103, Biolegend (San Diego, USA).
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6

Formulation and Characterization of PLGA-PEG Nanoparticles

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Methoxy terminated PLGA-PEG (10:5 kDa) was purchased from Polyscitech (West Lafayette, IN). Polyvinyl alcohol (PVA, 25 kDa) was purchased from Polysciences (Warrington, PA). Antibody to L-plastin (SC-16657) was purchased from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA). Phosphoserine (125277) antibody was bought from Abcam (Cambridge, MA). Recombinant TNF-α (216-TA) and MCSF (416-ML) were purchased from R&D Systems (Minneapolis, MN). Protein estimation reagent, molecular weight standards for proteins, and PAGE reagents were bought from Bio-Rad. HRP-conjugated secondary antibodies for immunoblotting were obtained from GE Healthcare. PLGA (7-17 kDa, 50:50), dichloromethane (DCM), anti-rabbit antibodies to GAPDH, Rhodamine-phalloidin, and other chemicals were purchased from Sigma-Aldrich (St. Louis, MO). sNT-LPL peptides (fluorescence-conjugated and unconjugated) are made from Genscript Co. (Piscataway (NJ)).
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7

Isolation and Culture of Murine Bone Marrow Macrophages

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WT or PIP5k1β−/− BMMs were obtained as described previously (Qin et al., 2012 (link); Li et al., 2013 (link)). In brief, bone marrow cells extracted from the femurs and tibiae of 9–10-week-old WT and littermate PIP5k1β−/− mice were cultured in α-MEM medium containing 15 ng/ml M-CSF (416-ML; R&D) in a T-75 cm2 flask for proliferation for 2–3 days until reaching 90% confluence. The cells were washed with phosphate buffer solution (PBS) three times and trypsinized for 30 min. Adherent cells were classified as BMMs. WT and PIP5k1β−/− BMMs were plated on 96-well plates at a density of 8 × 103 cells/well in triplicate and incubated with α-MEM medium containing 20 ng/ml M-CSF in a humidified incubator containing 5% CO2 at 37°C for 2 days. The cells were then cultured with α-MEM medium with M-CSF (20 ng/ml), RANKL (75 ng /ml; 315-11; Peprotech), and indicated inhibitors for indicated times. The medium was changed every other day. The inhibitors for p38/MAPK (SB203580), MAPK/ERK (U0126-EtOH), and JNK (SP600125) were purchased from Selleckchem. For osteoblast differentiation, BMSCs were gained from 9–10-week-old mice and expanded as previously described, induced by culturing cells in osteogenic medium (DMEM containing 1 M β-glycerophosphate, 50 mM ascorbic acid, and 1 mM methylisobutylxanthine) for indicated times, followed by subsequent experiments.
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8

Bone Marrow Macrophage Differentiation

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Bone marrow from tibia and femur of WT and cKO mice was flushed with α-MEM and cells pelleted by centrifugation at 1500 rpm for 5 min. Bone marrow cells were then cultured in complete α-MEM media supplemented with 10% fetal bovine serum, 1% antibiotic, and 30 ng/ml of recombinant mouse macrophage colony stimulating factor (MCSF, 416-ML, R&D systems, Minneapolis, MN, USA) at 37 °C in a humidified 5% CO2 atmosphere to allow cell attachment. After 2 days, non-adherent cells were removed and discarded; adherent cells were cultured to confluence and treated as bone marrow macrophages (BMMs). BMMs of passage 1 or 2 were used in the experiments below. BMMs were seeded on to 96-well plate (6 × 103 cells/well) and treated with 30 ng/ml MCSF, and 100/25 ng/ml RANKL (462-TEC, R&D systems) to induce OC formation. The media was replaced with supplemented MCSF and RANKL (with and without BS) every 2 days and after 7 days of culture, the cells were fixed in 2.5% glutaraldehyde and stained with Acid Phosphatase staining kit (387 A, Sigma–Aldrich, St. Louis, MO, USA) according to the protocol of the manufacturer. TRAP-positive multinucleated cells with more than three nuclei were counted as OCs using light microscopy. The number of OCs in each well was counted using ImageJ software.
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9

Assessing Macrophage Phagocytosis in Mice

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Bone marrow macrophages were isolated from hind-limb femurs of 8-week-old WT and SKO mice. Briefly, the marrow cells were flushed from the bones with alpha minimum essential medium supplemented with 10% heat-inactivated foetal calf serum with a 26-gauge needle and incubated at 37 °C for 4 h. Approximately 2 × 107 cells were seeded in a 10-cm dish with complete alpha minimum essential medium including 10 ng ml−1 of mouse recombinant colony-stimulating factor (M-CSF, 416-ML) (R&D Systems). After 1 week, bone marrow-derived macrophages were obtained. In vitro phagocytosis was performed as described by Ahn et al.5 (link). Specifically, thymocytes were isolated from 8-week-old mice, treated with 20 µg ml−1 of DMBA for 48 h and transfected with fluorescein isothiocyanate-labelled dsDNA and then added to macrophages for 1 h. Following vigorous washing to remove unengulfed thymocytes, macrophages were fixed with 4% paraformaldehyde solution overnight at 4 °C, counterstained with DAPI and subjected to fluorescence microscopy analysis. For gene expression, macrophages were incubated with thymocytes for 6 h and subjected to quantitative PCR analysis.
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