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Agilent 6460 triple quadrupole mass spectrometer

Manufactured by Agilent Technologies
Sourced in United States, Germany

The Agilent 6460 triple quadrupole mass spectrometer is a high-performance analytical instrument designed for quantitative and qualitative analysis. It utilizes triple quadrupole technology to provide precise and sensitive detection of target analytes in complex samples.

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96 protocols using agilent 6460 triple quadrupole mass spectrometer

1

Phenolic Compound Quantification via UPLC-MS/MS

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The identification and quantification of phenolic compounds was performed using a 1290 infinity Agilent Ultra High-Performance Liquid Chromatography system coupled to a 6460 Agilent triple quadrupole mass spectrometer (UPLC-MS/MS), as was previously reported in Juárez-Trujillo et al. (2018) [50 ] and Monribot et al. (2019) [51 (link)].
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2

Serum Metabolite Quantification by HPLC-MS

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One hundred fifty–microliter serum samples were spiked with calibration and internal standards and diluted with a 5% methanol solution containing 0.1% acetic acid. Samples were extracted using solid-phase extraction (HLB Oasis, Waters Chromatography) and analyzed using an high performance liquid chromotography system coupled to a 6460 Agilent Triple Quadrupole mass spectrometer (Agilent Technologies) [27 (link)].
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3

Enzymatic Cleavage of FR17 and sFD17 Peptides

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To verify the enzymatic cleavage of FR17 and sFD17 to release FG8, peptide FR17 or sFD17 (200 µM, HBS buffer) was cultivated with pre-activated hMMP2 (200 ng/ml) for 10 min. The reaction was terminated by adding 3 volume of methanol and centrifuged at 13,000 rpm for 15 min to discard the protein precipitation. LC-MS/MS analyses were performed using an Agilent 6460 triple quadrupole mass spectrometer (Agilent Technologies, USA) equipped with an electrospray ionization source, operated in the positive ion multiple-reaction monitoring mode. Agilent MassHunter Workstation was used for data acquisition and processing. Chromatographic separation was carried out on a Zorbax SB C18 column (150 × 2.1 mm, 3.5 µm). Peptide alone was analyzed as standard control. The ion pairs to identify specific peptide sequence were auto-optimized by MassHunter Workstation Software, Optimizer for 6400 Series Triple Quadrupole (version B.09.00, Agilent Technologies, USA).
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4

Agilent LC-MS/MS Quantification of Atorvastatin Calcium

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The analysis was performed on an Agilent 1290 series liquid chromatography system (Agilent Technologies, Palo Alto, CA, USA) that included a binary pump, an on-line vacuum degasser, a surveyor autosampling system, a column temperature controller and an Agilent 6460 triple-quadrupole mass spectrometer (Agilent Technologies, CA, USA) with Turbo Ion spray, which is connected to the liquid chromatography system. The Agilent MassHunter B 4.0 (Agilent Technologies, CA, USA) software was used to control the equipment and for data acquisition. The chromatographic analysis of AC was performed on a Waters X-Bridge C18 column (Milford, MA, USA) (3.0 × 100 mm, i.d.; 3.5 μm) at room temperature. The mobile phase was water (containing 0.1% formic acid) and acetonitrile (30:70, v:v) at a flow rate of 0.4 mL/min.
The mass scan mode was the positive MRM mode. The precursor ion and product ion were m/z 559.2 → 440.2 for AC and m/z 419.9 → 199.4 for the simvastatin, respectively. The collision energy for AC and simvastatin were 30 and 25 eV, respectively. The MS/MS conditions were optimized as follows: fragmentor, 140 V; capillary voltage, 4 kV; nozzle voltage, 500 V; nebulizer gas pressure (N2), 40 psig; drying gas flow (N2), 10 L/min; gas temperature, 350 °C; sheath gas temperature, 400 °C; and sheath gas flow, 11 L/min.
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5

Quantitative UHPLC-MS/MS Choline Metabolome

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Targeted UHPLC-MS/MS of choline and its downstream metabolites measurements was performed by Shanghai Biotree Biomedical Technology Co., Ltd. (Shanghai, China). The serum was mixed with a 4× volume of 0.1% formic acid aqueous solution and a 20× volume of acetonitrile (0.1% formic acid, containing isotopically labeled internal standard mixture), vortexed for 30 s, and then sonicated for 15 min in an ice-water bath, followed by incubation at –40°C for 60 min. After centrifugation at 12,000 × g and 4°C for 15 min, an 80-μL aliquot of the clear supernatant was transferred to an autosampler vial for UHPLC-MS/MS analysis. UHPLC separation was carried out using an Agilent 1290 Infinity II Series UHPLC System (Agilent Technologies) equipped with ACQUITY UPLC BEH Amide (100 × 2.1 mm, 1.7 μm; Waters). An Agilent 6460 triple-quadrupole mass spectrometer (Agilent Technologies) equipped with an AJS ESI interface was applied for assay development. The multiple reaction monitoring (MRM) parameters for each of the targeted analytes were optimized using flow injection analysis by injecting the standard solutions of the individual analytes into the API source of the mass spectrometer. Agilent MassHunter Work Station Software (B.08.00; Agilent Technologies) was used for MRM data acquisition and processing.
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6

Characterization of Recombinant Glucoside Compounds

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The glucosides produced by the recombinant proteins were dissolved in methanol and analyzed by the Agilent 1290 Infinity LC System (binary pump G4220A, diode array UV/VIS detector G4212A; Agilent Technologies) coupled with a SunFire C18 analytical column (5 μm, 4.6 × 250 mm; Waters, USA). The chromatograms were obtained and detected between 200 nm and 400 nm. HPLC were performed at a flow rate of 1 ml min−1 with 100% water as solvent A and 100% acetonitrile as solvent B. The injection volume of samples was 20 ml. The column was first equilibrated with 10% solvent B and eluted with a linear gradient program from 30% to 70% solvent B for 15 min, then washed with 100% solvent A for 15 min. The MS analyses were performed with an Agilent6460 triple quadrupole mass spectrometer equipped with negative ion electrospray ionization (ESI) MS in full scan mode. The scan range was 100–1000 m/z, and the nebulizer pressure was set as 45 psi. Identification of glucoside was based on the HPLC retention time and MS spectral data. Linalyl-β-d-glucoside was quantified by absorption at 210 nm, and the m/z value was 315 [M-H] according to Bönisch et al. (2014) (link).
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7

Extraction and Analysis of Air Filter Contaminants

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The extraction method was referred to the treatment of air lters with some modi cation. Cotton balls with dust were extracted in polypropylene tube by ultrasound equipment. Before extraction, 5 ng IS mixture was spiked. About 15 mL 0.1% ammonia methanol were added in the tube, and then extracted for 15 min. After being centrifuged at a speed of 3500 r/min for 10 min, the super cial liquid was collected. Cotton balls with dust were extracted twice. All extract was collected together, and then concentrated to less than 0.5 mL under a gentle stream of high purity nitrogen. Envi-carb cartridges and nylon member lters were used to remove the impurity. The nal volume of each sample was reduced to 200 µL.
The instrument analysis employed Agilent 1290 series liquid chromatograph interfaced with an Agilent 6460 triple quadrupole mass spectrometer (HPLC-MS/MS, Agilent Technologies, USA). The detailed information of instrument analysis could be found in previous studies (Fang et al., 2018 (link), Zhao et al., 2020) .
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8

LC-MS/MS Analysis of Charged Hormones

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LC‐MS/MS analysis was carried out on an Agilent 1290 series chromatographic system and an Agilent 6460 triple quadrupole mass spectrometer (Agilent Technologies) with electrospray ionization (ESI). Separation of negatively charged hormones was achieved in a Waters Xbridge BEH C18 column (2.1 mm × 150 mm, 3.5 μm), whereas separation of positively charged hormones was achieved in a Phenomenex Gemini C18 column (2.0 mm × 100 mm, 3.0 μm). The mobile‐phase gradient was composed of solvent A (0.1% ammonia) and solvent B (acetonitrile) with a flow rate of 300 μl/min and was performed as follows: 0–0.5 min (80% A, 20% B), 1–6 min (60% A, 40% B), 6–7 min (55% A, 45% B), and 7–9 min (10% A, 90% B). The injection volume was 15 μl, and the column was set at 40°C. For mass spectrometric analysis, the ESI settings were as follows: capillary voltage 3.0 kV; desolvation gas flow rate 9 L/min at 350°C; and nebulizer pressure 45 psi. MS‐MS acquisition was performed in multiple‐reaction‐monitoring (MRM) mode. The optimized settings for product ions of each hormone are shown in Table 1.
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9

UHPLC-MS/MS Analysis of Polar Compounds

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The UHPLC separation was achieved using an Agilent 1290 Infinity II series UHPLC System (Agilent Technologies; Santa Clara, CA, USA), which was equipped with an ACQUITY UPLC BEH Amide column (100 × 2.1 mm, 1.7 μm; Waters; Milford, MA, USA). The mobile phase A was 1% formic acid in water, while the mobile phase B was 1% formic acid in acetonitrile. The column temperature was set at 35 °C. The auto-sampler temperature was at 4 °C with an injection volume of 1 μL.
Further, an Agilent 6460 triple quadrupole mass spectrometer (Agilent Technologies; Santa Clara, CA, USA) was used, equipped with an electrospray ionization (AJS-ESI) interface (Agilent Technologies; Santa Clara, CA, USA). The ion source parameters were as follows: capillary voltage at + 4000/− 3500 V, nozzle voltage at + 500/− 500 V, gas (N2) temperature at 300 °C, gas (N2) flow at 5 L/min, sheath gas (N2) temperature at 250 °C, sheath gas flow 11 L/min, and nebulizer pressure 45 psi.
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10

Quantitative Analysis of DNA Modifications

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Concentrated, purified reaction products representing 200 μL of the TET reaction (up to 5 pmol) were degraded to component nucleosides with 1 U DNA Degradase Plus (Zymo) in 10 μL at 37 °C overnight. The nucleoside mixture was diluted 10-fold into 0.1% formic acid, and 20 μL were injected onto an Agilent 1200 Series HPLC with a 5 μm, 2.1 × 250 mm Supelcosil LC-18-S analytical column (Sigma) equilibrated to 50 °C in Buffer A2 (5 mM ammonium formate, pH 4.0). The nucleosides were separated in a gradient of 0–10% Buffer B2 (4 mM ammonium formate, pH 4.0, 20% (v/v) methanol) over 7 min at a flow rate of 0.5 mL/min. Tandem MS/MS was performed by positive ion mode ESI on an Agilent 6460 triple-quadrupole mass spectrometer, with gas temperature of 175 °C, gas flow of 10 L/min, nebulizer at 35 psi, sheath gas temperature of 300 °C, sheath gas flow of 11 L/min, capillary voltage of 2,000 V, fragmentor voltage of 70 V, and delta EMV of+1,000 V. Collision energies were optimized to 10 V for mC, fC, and T; 15 V for caC; and 25 V for hmC. MRM mass transitions and data analysis were as described above.
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