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5 protocols using bradford protein determination assay

1

Western Blot Protein Analysis

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Cells were lysed in RIPA buffer (Boston Bio Products) supplemented with protease and phosphatase inhibitors. Proteins were quantified using the Bradford protein determination assay (Bio-Rad), and 20–30 μg of protein were loaded and resolved on 10% NuPAGE Bis-Tris gels (Life Technologies) then transferred to nitrocellulose membranes (Bio-Rad) before incubation with the indicated antibodies. Proteins were detected using SuperSignal West Pico Chemiluminescent Substrate (Pierce).
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2

Western Blot Analysis of Cell Signaling

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Cells were washed 3 times with PBS and lysed in lysis buffer (50 mM Tris-HCl, 150 mM NaCl, 2 mM EDTA, 1% Triton X-100 and 0.1% SDS; pH 8.0) with protease and phosphatase inhibitors (Sigma-Aldrich; Merck KGaA, Darmstadt, Germany). Cell lysates were centrifuged (10,000 × g at 4°C for 10 min). The protein concentration was measured using a Bradford protein determination assay (Bio-Rad Laboratories) and 20 µg protein was loaded per the lane. Proteins were separated on 10% SDS-PAGE gels and blotted onto nitrocellulose membranes (Bio-Rad Laboratories, Inc., Hercules, CA, USA). The membranes were blocked in 3% non-fat dry milk for 1 h at room temperature and probed with primary antibodies for FOXO3, pAkt, Akt, p27, LaminB1, GAPDH, cleaved caspase3, Bim (EL), Bax, Bcl2, and β-actin. All antibodies were diluted at 1:1,000 and incubated for 1 h at room temperature. Membranes were then probed with HRP-tagged goat anti-mouse or anti-rabbit IgG antibodies, diluted at 1:15,000 and 1:5,000 respectively, for 1 h at room temperature. Chemiluminescence was detected using ECL.
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3

Cardiac Protein Expression Analysis

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Ventricles, n = 5⿿7/treatment/sex/diet, were homogenized in RIPA buffer (1% NP-40, 50 mM Tris (pH 7.4), 0.5% deoxycholate, 159 mM NaCl, 0.1% SDS, 10 mM sodium metabisulfite, 1 mM sodium vanadate, proteinase inhibitor cocktail, PhosSTOP (Roche, Indianapolis, IN), and 1 mM PMSF). Protein was measured using the Bradford Protein Determination Assay (BioRad, Hercules, CA) as per the manufacturer⿿s instructions.
Protein expression was measured using standard immunoblotting methods. Primary antibodies to the cardiac calcium homeostasis proteins sodium calcium exchanger-1 (NCX1, Abcam Inc, Cambridge, MA ab6495); sarcoplasmic calcium ATPase 2a (SERCA2a, Santa Cruz Biotechnology, Santa Cruz, CA, sc-8095); cardiac calsequestrin 2 (CASQ2, Abcam Inc, Cambridge, MA, ab626662); phospholamban (PLB, Thermo Scientific, Nepean, ONT, MA3-922); and phospho-serine 16-specific PLB (pS16-PLB, Millipore, Temecula, CA, 07-052 1) were obtained. Secondary antibodies complexed to horseradish peroxidase and chemiluminescent detection kits were obtained from Pierce Chemical Co., (Rockford, IL). Several exposures from each membrane were collected onto X-ray film. After immunoblotting, membranes were washed, permanently stained with Coomassie Brilliant Blue, destained and scanned. The bands on the X-ray film and stained membrane were scanned and quantitated using Image J software.
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4

Protein Extraction and Western Blot Analysis

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Cells were lysed in RIPA buffer (Boston Bio Products, Ashland, MA, USA) supplemented with a cocktail of protease inhibitors (5892791001, Roche, Basel, Germany) and phosphatase inhibitor (4906845001, Roche). Protein quantification was determined using the Bradford protein determination assay (Bio-Rad). A 30 μg sample of protein was loaded and resolved on a 10% NuPAGE BIS-TRIS gel (Life Technologies), then transferred to a nitrocellulose membrane (Bio-Rad) before incubation with primary antibodies. DNA-dependent protein kinase catalytic subunit (DNA-PKcs) antibody was obtained from Santa Cruz (sc-5282, Dallas, TX, USA) and anti-phosphorylated DNA-PKcs was purchased from Abcam (ab124918, Cambridge, MA, USA). Anti-RAD51 was purchased from BIOSS Antibodies (BSM-51402M, Woburn, MA, USA) and anti-β-actin was obtained from Cell Signaling Technologies (3700, Danvers, MA, USA). Gluc antibody was obtained from New England BioLabs (E8023). GAPDH antibody was obtained from Novus Biologicals (NB300–228, Centennial, Colorado, USA). Proteins were detected using SuperSignal West Pico Chemiluminescent Substrate (#34077, Thermo Fisher Scientific).
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5

Western Blotting Analysis of DNA Repair Proteins

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Sequencing results were analysed using the CRISPREsso web portal with average reading quality and single bp quality >30 according to the phred33 scale (26) .
Western blotting analysis. Cells were lysed in RIPA buffer (Boston Bio Products, Ashland, MA, USA) supplemented with a cocktail of protease inhibitors (5892791001, Roche, Basel, Germany) and phosphatase inhibitor (4906845001, Roche). Protein quantification was determined using the Bradford protein determination assay (Bio-Rad). A 30 µg sample of protein was loaded and resolved on a 10% NuPAGE BIS-TRIS gel (Life Technologies), then transferred to a nitrocellulose membrane (Bio-Rad) before incubation with primary antibodies. DNAdependent protein kinase catalytic subunit (DNA-PKcs) antibody was obtained from Santa Cruz (sc-5282, Dallas, TX, USA) and anti-phosphorylated DNA-PKcs was purchased from Abcam (ab124918, Cambridge, MA, USA). Anti-RAD51 was purchased from BIOSS Antibodies (BSM-51402M, Woburn, MA, USA) and anti-βactin was obtained from Cell Signaling Technologies (3700, Danvers, MA, USA).
Gluc antibody was obtained from New England BioLabs (E8023). GAPDH antibody was obtain from Novus Biologicals (NB300-228, Centennial, Colorado, USA).
Proteins were detected using SuperSignal West Pico Chemiluminescent Substrate (#34077, Thermo Fisher Scientific).
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