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8 protocols using agilent 5973n msd

1

Fatty Acid Profiling by GC-MS

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The total concentrations of palmitic acid (16:0), stearic acid (18:0), myristic acid (14:0), behenic acid (22:0), arachidic acid (20:0), gondoic (20:1), oleic (18:1), and linoleic (18:2) were determined from tissues by gas chromatography–mass spectrometry73 (link). A known quantity of tissue was hydrolyzed and extracted after adding a known amount of heptadecanoic acid (17:0). Fatty acids were analyzed as their trimethylsilyl derivatives under electron impact ionization mode using an Agilent 5973N-MSD equipped with an Agilent 6890 GC system and a DB17-MS capillary column (30 m × 0.25-mm internal diameter × 0.25-μm film thickness).
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2

GC-MS Analysis of Essential Oils

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The oils (marjoram, clary sage and anise) were analyzed further on a gas chromatograph (Agilent 6890N)-mass spectrometer (Agilent 5973N MSD) equipped with a DB-5MS column (30 m × 0.25 mm i.d., 0.25 μm film thickness, J & W Scientific, Folsom, CA). The oven temperature was programmed as described previously. Helium was used as the carrier gas at the rate of 1.0 mL/minute. The effluent of the GC column was introduced directly into the source of the MS via a transfer line (250°C). Ionization voltage was 70 eV and the ion source temperature was 230°C. Scan range was 41–450 amu. Compounds were identified by comparison of mass spectra of each peak with those of authentic samples in the NIST MS library.
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3

GC-MS Analysis of Derivatized Samples

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GC-MS analysis was performed as previously described with some modifications [35 (link)]. An Agilent 6890 GC (Agilent Technologies) coupled to an Agilent 5973N MSD (Agilent Technologies) was used. One microliter of the derivatized sample was injected through an Agilent 7683 ALS (Agilent Technologies) into the GC in splitless mode. Samples were separated on an RTX-5Sil MS column (30 m × 0.25 mm × 0.25 μm, Restek, Bellefonte, PA, USA). The initial oven temperature was 50 °C for 1 min and then ramped at 20 °C/min to a final temperature of 330 °C and held for 5 min. Helium was used as a carrier gas at 0.7 mL/min. The temperatures of the ion source and transfer line were set to 230 °C and 250 °C, respectively. An electron impact of 70 eV was used for ionization. The mass selective detector was operated in scan mode with a mass range of 50–650 m/z.
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4

Derivatization and GC-MS Analysis of Organic Compounds

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TcHE, FHEX, FAcOEt, and FBuOH samples were derivatized with N,O-bis (trimethylsilyl) trifluoroacetamide with trimethylchlorosilane (BSTFA+TMCS, 99:1, v/v) (Sigma-Aldrich, St. Louis, MO, USA). The samples were analyzed using an Agilent 6890 gas chromatograph (Agilent Technologies, Inc., Santa Clara, CA) and mass spectrometry (Agilent 5973N MSD) with an HP-5 Agilent® (0.25 mm × 30 m × 0.25 μm) column under the following conditions: 230°C injection temperature, 250°C interface, 200°C ion source with a helium carrier gas flow of 1 ml/min. The column oven temperature increased as follows: 5 min of heating (70°C), gradient of 5°C/min up to 310°C.
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5

Muscle Protein Synthesis Measurement Protocol

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Plasma samples and standards were prepared and analyzed as described previously [23 (link)]. Briefly, 20 μl of plasma/standard, 4 μl of 5% acetone in acetonitrile (vol/vol), and 2 μl of 10 N NaOH were combined and permitted to settle for 24 h. Each sample/standard was thoroughly mixed with 600 μl of chloroform and 0.5 g of Na2SO4. The sample/standard was analyzed on a GC-MS (Agilent 5973 N-MSD furnished with an Agilent 6890 GC System and DB17-MS capillary column).
Approximately 30 mg of muscle (soleus and plantaris) from each sample was homogenized with 0.3 ml of 10% TCA and centrifuged for 15 min at 3800 rpm at 4 °C. The resultant pellet was then washed with 10% TCA, centrifuged, and disposed of the supernate for an additional 3 times. The pellet was then mixed with 6 N HCl and incubated for 18 h at 100 °C. The hydrolysate was then freeze dried for 24 h before 100 μl of a 3:2:1 ratio of methyl-8, methanol and acetonitrile were added to each sample and analyzed on the GC-MS.
The following equation was used to determine the mixed muscle protein FSR: EA·EBW×3.7×t1.
EA signifies the quantity of 2H-labeled alanine in protein (%), EBW indicates the amount of 2H2O found in body water (%), and t represents time in h [23 (link)].
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6

Tap vs. Bottled Water THM Analysis

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2.1. Sampling and THM analysis Kavcar et al. (2006) (link) had collected samples from 100 households in Izmir, Turkey. While tap water was drunk in 65 of the 100 sampled households, the remaining 35 consumed bottled water. Bottled water samples were directly collected from the container. Tap water samples were collected after the 3 min flushing. Ascorbic acid was used as a quenching agent for inhibition of the oxidant activity. Sampling vials were immediately closed and shaken for mixing the sample and quenching agent. All samples were transferred to the laboratory in dark in a cooler, and extracted within five days. Gas chromatography instrument (Agilent 6890N) with a mass selective detector (Agilent 5973N MSD) was used for analysis of THMs. Five-point calibration (1, 5, 25, 50, and 100 μg/L) was used. R 2 values of calibration curves were higher than 0.996. Further details can be found in the previous study (Kavcar et al., 2006) (link). Total THM concentrations measured by the local authorities at several points in the water distribution system in 2013-2017 period were obtained to validate the use of previously measured concentrations by comparing the two sets by hypothesis testing.
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7

GC-MS Analysis of Phthalate Metabolites

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Extracted solutions were analysed using GC/MS instrumentation. An HP GC6890 (Agilent Technologies Inc., Palo Alto, CA, USA) and Agilent 5973N MSD (Agilent Technologies Inc., Palo Alto, CA, USA) were used for analysis of 8 phthalate metabolites and MEHP-d 4 . The column was a DB-5MS (30 m × 0.25 mm i.d. × 0.25 μm; Agilent Technologies, Inc., Santa Clarita, California, USA). Helium was used as the carrier gas (70 kPa, constant flow mode). The oven temperature was programmed as follows: 80 for 2 min, followed by 20°C/min up to 300°C for 20 min. The injector was operated in the split mode at 280°C (1 μL injection volume). The detector was operated in the selective ion mode (SIM) at a temperature of 230°C.
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8

GC-MS Analysis of Volatile Compounds

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The chromatographic analysis were performed using an Agilent 6890A gas chromatograph, equipped with a Gerstel MPS2 autosampler (Gerstel, Maryland, USA), coupled to a single quadrupole mass spectrometer, Agilent 5973N MSD (Agilent Technologies, California, USA), operating in EI mode. The GC separation was performed using a fused silica Supelcowax 10 capillary column with a length of 30m x 0.25mm ID and a film thickness of 0.25 µm (Sigma Aldrich, Germany). The oven program was set as follows: 40ºC (3 min); 5.00 ºC/min to 160ºC (1.00 min); 40.00 ºC/min to 260ºC (1.50 min). The injection system consisted of two units; the thermal desorption unit (TDU) and the programmable temperature vaporizing (PTV)cooled injection system (CIS4) (Gerstel, Maryland, USA). The TDU parameters were set as follows; sample removal mode, splitless at an initial temperature of 40ºC (1 min equilibrium time); 60 ºC/min to 260ºC (4 min), transfer line temp 260ºC. The CIS4 PTV was equipped with a Tenax ® TA packed liner, CIS4 temperature program: 40ºC
(1 min equilibrium time); 12 ºC/s to 260ºC (4 min). A summary of the different temperature programs is graphically displayed in Figure S2.
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