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24 protocols using anti lats1

1

Investigating MUC1-C Protein Interactions in Cell Lysates

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Whole cell lysates were prepared using NP-40 lysis buffer containing protease inhibitor cocktail (Thermo Scientific). Nuclear and cytosolic lysates were prepared using the NucBuster nuclear protein extraction kit (Millipore). Soluble proteins were immunoprecipitated with anti-MUC1-C (NeoMarker) or a control IgG. Immunoprecipiates and lysates not subjected to precipitation were analyzed by immunoblotting with anti-MUC1-C (NeoMarker), anti-CRB3 (Abcam), anti-HUGL2 (Genetex), anti-PATJ, anti-SNAIL1 (Santa Cruz Biotechnology), anti-CDC42, anti-ZEB1, anti-phospho-LATS1, anti-LATS1, anti-phospho-YAP, anti-YAP, anti-HDAC1 (Cell Signaling Technology) and anti-β-actin (Sigma). Immunoreactive complexes were detected using horseradish peroxidase-conjugated secondary antibodies (GE Healthcare) and an enhanced chemiluminescence (ECL) detection system (Perkin Elmer Health Sciences).
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2

Histological and Immunohistochemical Analysis of Mouse Intestinal Samples

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Mouse intestinal samples were collected, fixed overnight in 4% paraformaldehyde in PBS, embedded in paraffin, and sectioned at 5 µm. Sections were stained with hematoxylin–eosin for histological analysis. Immunohistochemistry on serial sections was performed according to the manufacturers’ protocols. Intraperitoneal injection of 30 mg/kg BrdU (Sigma) dissolved in 3 mg/mL 1× PBS was performed 2 h before tissue harvest. The primary antibodies used for immunohistochemistry were rabbit anti-β-catenin (1:500; Sigma), anti-YAP (1:100; Cell Signaling), anti-p-YAP (S127; 1:100; Cell Signaling), anti-YAP/TAZ (1:100; Cell Signaling), anti-Ki67 (1:1000; Novocastra), anti-Lats1 (1:100; Cell Signaling), and mouse anti-BrdU (1:50; Developmental Studies Hybridoma Bank). The signals were developed using the ABC kit purchased from Vector Laboratories according to the manufacturer's suggestions. Cy3-conjugated goat anti-rabbit and Alexa 488-conjugated goat anti-mouse secondary antibodies (Molecular Probes) were used for immunofluorescence.
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3

Western Blot Analysis of Protein Expression

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Protein samples were diluted 1:5 with protein loading buffer (6 × Transgen Biotech, Beijing, China) and heated at 95 °C for 5 min. Protein extracts were separated with sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), transferred to polyvinylidene fluoride membranes, and blocked with 5% nonfat dry milk in TBST. The membranes were incubated with primary antibodies at 4 °C overnight and with the horseradish peroxidase (HRP)-conjugated secondary antibodies at 37 °C for 1 hour. Protein bands were visualized by enhanced chemiluminescence reagent (Thermo Fisher Scientific, Waltham, MA) and imaged by a FluorChem M gel documentation system (ProteinSimple, San Jose, CA). The primary antibodies (anti-YAP, anti-p-YAP, anti-LATS1, anti-p-LATS1, anti-MYPT1, anti-p-MYPT1, anti-CREB, anti-p-CREB, anti-GAPDH, anti-α-tubulin, anti-histone H3) and secondary antibodies were obtained from Cell Signaling Technology (Danvers, MA, USA). CTGF antibody was obtained from Sigma-Aldrich (St Louis, MO, USA).
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4

Western Blot Analysis of Protein Expression

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Total proteins were extracted with RIPA lysis buffer (Beyotime, Shanghai, China), and electrophoresed using 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis and transferred to polyvinylidene fluoride membranes (Bio-Rad, Hercules, CA, USA). Membranes were blocked in Quick Block (Beyotime, Shanghai, China) for 15 min, then incubated with specific primary antibodies (1:1000) at 4°C overnight. Anti-PAX5 (Biorbyt, Cambridge, UK), anti-slug, anti-E-cadherin, anti-vimentin, anti-p-LATS1, anti-LATS1, anti-p-YAP, and anti-YAP (Cell Signaling Technology, USA) were used. Membranes were incubated in secondary antibodies at room temperature for 1 hour. TBST was used to wash unbound antibodies. An enhanced chemiluminescence detection system was used to detect target proteins. GAPDH and β-actin were internal controls.
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5

Culturing Cancer Cell Lines

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The HEK293, MCF7 breast cancer cells, and A549 lung cancer cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM) supplemented with 10% fetal bovine serum (FBS). HCT116 colon cancer cells were cultured in McCoy’s 5A medium with 10% FBS. Cell detachment was achieved by culturing cells in poly–HEMA (2-hydroxyethyl methacrylate)–coated dishes. Where indicated, the following drugs were used: phosphatase inhibitors (10 mM sodium fluoride, 10 mM sodium pyrophosphate) and 2-DG (25 mM) were from Sigma. Glucose-free DMEM was from Thermo Fisher Scientific. The following antibodies were obtained commercially: anti-CTCF (Cell Signaling Technology, #3418), anti–phospho-RxxS/T motif (Cell Signaling Technology, #9614), anti-LATS1 (Cell Signaling Technology, #3477), anti-MST2 (Cell Signaling Technology, #3952), anti-YAP (Cell Signaling Technology, #14074), anti–phospho-YAP (S127) (Cell Signaling Technology, #13008), anti-Flag (Sigma, #F1804), and anti-tubulin (Sigma, #T9026). Rabbit polyclonal anti–phospho-CTCF (S402) antibodies were custom generated using a specific phosphopeptide (GenScript).
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6

Hippo Signaling Pathway Antibodies

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Antibodies against caspase 9 (sc-56077) and β-actin (sc-8432) were obtained from Santa Cruz Biotechnology, Texas, United States. Others were purchased from Cell Signaling Technology: anti-PARP (#9542), anti-cleaved caspase 3 (#9661), anti-MST1 (#3682), anti-MST2 (#3952), anti-p-MST1(T183)/MST2(T180) (#49332), anti-LATS1 (#3477), anti-p-LATS1(S909) (#9159), anti-p-LATS1(T1079) (#8654), anti-MOB1 (#13730), anti-p-MOB1 (T35) (#8699), anti-SAV1 (#13301), anti-YAP (#14074), anti-p-YAP (S127) (#13008), and anti-p-YAP (S397) (#13619). RNase A and Propidium Iodide/PI were purchased from Coolaber (Beijing, China) and Sigma-Aldrich (United States), respectively.
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7

Western Blot Analysis of Yap-Hippo Pathway

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Cellular or tissue samples were lysed with RIPA lysis buffer freshly adding cocktail protease inhibitor (Thermo Scientific). Equal amounts of cellular proteins were subjected to electrophoresis in SDS-PAGE, and transferred to nitrocellulose membranes (Millipore). The membranes were blocked and then incubated at 4 °C overnight with indicated first antibodies, followed by incubation with the appropriate HRP-conjugated secondary antibodies (Thermo Scientific). The protein bands were detected and analyzed with an ECL. The following antibodies were used: anti-Aurora A (Upstate, #07-648), anti-phospho-Aurora A (Thr288) (Cell Signaling Technology, #3079), anti-YAP (Cell Signaling Technology, #4912), anti-phospho-YAP(ser127) (Cell Signaling Technology, #4911), anti-phospho-YAP(Ser397) (Cell Signaling Technology, #13619), anti-Lats1 (Cell Signaling Technology, #3477 P), anti-phospho-Lats1 (Thr1079) (Cell Signaling Technology, #9654P), anti-Lats2 (Rui Ying biological, China, #RLP1047), anti-SAV1 (Cell Signaling Technology, #3507P), anti-MST1 (Cell Signaling Technology, #3682P), anti-GAPDH (Kangcheng, China,#KC-5G4), anti-Lamin B1 (Epitomics, #6581-1), anti-CTGF (Life Science Products & Services, #AB60212a), anti-Myc Tag (MERCK, 05-724).
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8

Western Blot Profiling of Hippo Signaling

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The transfected cells were lysed by RIPA (Solarbio, Shanghai, China) for total protein extracts, which were quantified by BCA method. Then, the extracts were separated on 10% SDS-PAGE gel. According to sandwich structure, the electrotransfer was assembled to move the protein into PVDF membranes (GE Healthcare, Piscataway, NJ, USA), which were further incubated with the primary antibodies as follow: anti-MST1, anti-SAV1, anti-LATS1, anti-YAP1 and anti-GAPDH antibody (Cell Signaling Technology). The membranes were incubated with second antibody and measured by ECL kit (ECL Amersham).
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9

Western Blot Analysis of Cell Signaling

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Cultured cells were lysed and analyzed. Primary antibodies used for Western blot were rabbit anti-MLC2 (1:1000; Cell Signaling, 8505), anti-p-MLC2 (1:1000; Cell Signaling, 3674), anti-Lats1 (1:1000; Cell Signaling, 3477), anti-p-Lats (Yu et al. 2010 (link)), anti-YAP (1:1000; Cell Signaling, 4912), anti-p-S397-YAP (1:1000; Cell Signaling, 13619), and anti-c-Myc (1:1000; Abcam, ab32072) and mouse anti-RhoA (1:500; Cytoskeleton, Inc., ARH03) and anti-Actin (1:20,000; Millipore, MAB1501R).
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10

Immunoprecipitation Assay for Protein Analysis

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Anti-MST1 (Cell Signaling Technology, USA), anti-LATS1 (Cell Signaling Technology, USA), anti-YAP (Cell Signaling Technology, USA), anti-YAP (Santa Cruz, USA), anti-PP2A Bβ (Proteintech, China), anti-Myc (Proteintech, China), anti-FLAG (Proteintech, China), or anti-IgG (Santa Cruz, USA) antibodies were incubated with Protein A/G Magnetic Beads (Bimake, USA) for 4 h at 4°C. Samples were lysed with Thermo Scientific Pierce IP Lysis Buffer (Thermo Fisher Scientific, USA) with protease inhibitor mixture (Bimake, USA) and incubated with an antibody-bead complex overnight at 4°C. The immunoprecipitation products were then precipitated by the antibody-bead complex using a magnetic rack and analyzed by western blotting.
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