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14 protocols using erythrosine b

1

Photothrombotic Unilateral Motor Cortex Lesion

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Unilateral motor cortex lesion was induced by photothrombosis as previously described with some modification [10 (link)]. Rats were anaesthetized with 10% chloral hydrate (300 mg/Kg body weight; Sinopharm Chemical Reagent) through intraperitoneal injection. Body temperature was maintained at 37°C ± 0.5 using a heating pad. The rats were restrained in a stereotaxic apparatus (ST-5ND-C, Chengdu Instrument factory). Under sterile conditions, a midline incision was made on the vertex of the scalp to expose the calvarial bone. Erythrosine B (20 mg/kg body weight, Sigma–Aldrich) was injected via the lateral tail vein. A beam of light from a fibre optic bundle of a cold light source (FC-532, SFOLT) with a wavelength of 532 nm and power of 170 mW was focused on the exposed skull for 10 min. The light beam illumination was targeted over the left cortical region corresponding to the right hindlimb (bregma +0.9 to −2.4, midline −1.0 to −4.9) for 10 min [11 (link)]. The scalp incision was then closed. In group A, rats received the similar procedure without Erythrosine B injection or light illumination.
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2

Impact of Oxytocin on hASCs Viability

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hASCs were seeded in a 6-well plate (Corning Incorporated, Corning, NY, USA) at a density of 3500 cells/cm2. After 24 h in standard conditions, cells were treated with OXT (100, 500, and 1000 nM) for 72 h (2 wells/condition). Then, cells were detached by trypsin-EDTA and counted. Cells were resuspended in a solution containing 50% of Erythrosine B (Sigma-Aldrich Co., St. Louis, MO, USA) red dye 0.2% in Phosphate Buffered Saline (PBS, Corning Incorporated, Corning, NY, USA). Viable and dead cells (not stained and red stained, respectively) were manually counted (at least twice for each condition) using the Neubauer hemocytometer (BRAND GmbH, Wertheim, Germany) and a light microscope Leica Labovert FS inverted Microscope (Leica Microsystems, Wetzlar, Germany). For each sample, cell viability was obtained by calculating the percentage of living cells compared to the total number of cells.
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3

Immortalized HEK 293 Cell Culture

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Immortalized human embryonic kidney (HEK 293) cells were commercially obtained from ATCC, catalogue Nr. CRL-1573. Cells were cultured in DMEM with GlutaMAXTM (Gibco, Paisley, UK) or stable glutamine (PAN Biotech, Aidenbach, Germany) containing high glucose (25 mM) and 1 mM sodium pyruvate. The medium was supplemented with 50 μg/mL uridine (Sigma-Aldrich/Merck, Darmstadt, Germany), 10% heat-inactivated tetracycline-free FBS (PAN Biotech, Aidenbach, Germany), and 100 U/mL penicillin and streptomycin (Gibco, New York, NY, USA). The POLGexo−/− cell line (p.D274A mutant) was obtained by CRISPR/Cas9 genome editing as described in Ref. [12 (link)]. The genotype was confirmed by Sanger sequencing (Figure S1).
Transient oxidative stress was induced on cells seeded at 90% confluence by applying H2O2 (Honeywell, Seelze, Germany) at concentrations of 0.5 or 1 mM. Viability was determined by adding 0.1% erythrosine B (Sigma-Aldrich, St. Louis, MO, USA) to cells suspended in 1× PBS (Gibco, Paisley, UK) and using a Neubauer hemocytometer (Paul Marienfeld, Lauda-Königshofen, Germany).
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4

SDS-Erythrosine B Langmuir Film Protocol

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The surfactant sodium dodecylsulfate (>98.5%, Sigma Aldrich, Cat#L3771) (SDS) and the water-soluble dye erythrosine B (>80%, Sigma Aldrich, CAT#E8886) were purchased from Sigma-Aldrich and used as received. SDS purity was verified via the absence of a surface tension minimum at its CMC (Figure S5). All water was deionized and further purified to a resistivity of 18 MΩ·cm using a Milli-Q Academic unit (Millipore Corporation). Polyacrylamide (MW 5MDa-6MDa, Polysciences, Inc. Cat#02806), used to modify subphase viscosity, was solvated into the purified water over the course of several weeks on an orbital shaker in order to ensure complete dissolution. Pyrex glass petri dishes of radius 7 cm were used to hold the subphases for all experiments. All glassware was acid cleaned on the day of use with Nochromix® (Sigma Aldrich, CAT#328693) and sulfuric acid (>95%, Fischer scientific, CAT#A300–212) solution. Between experiments on the same day, the glassware was rinsed with ethanol (>99.5, Pharmco, CAT#111000200), acetone (>99.5%, Pharmco-Aaper, CAT#329000000), and purified water sequentially, and then dried using compressed nitrogen. All experiments were conducted at room temperature, 21±2°C.
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5

Extracellular Vesicles Isolation and Characterization

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Cells were cultured until 70–80% confluence, then washed with phosphate-buffered saline (PBS) and incubated for two consecutive periods (18 h and additional 18 h) with IMDM supplemented with 10% FBS depleted of extracellular nanovesicles obtained via ultracentrifugation [18 (link)]. Cell density and viability were assessed by the erythrosine B (Sigma-Aldrich) dye exclusion method [19 (link)]. EVs pellet was obtained from the supernatant collected from MG-63, MG-63DXR30, 143B, and ADMSC cells grown on 15 Petri dishes (diameter 150 mm, 18 mL/Petri). The EVs were concentrated by a series of differential centrifugations: 500× g for 10 min (twice), 2000× g for 15 min (twice), and 10,000× g for 30 min (twice) at 4 °C to remove floating cells and cellular debris. The supernatant was then ultracentrifuged at 110,000× g for 1 h at 4 °C (Beckman Coulter, Milan, Italy). The EVs pellet was washed (110,000× g for 1 h at 4 °C), resuspended in PBS, and stored at −80 °C until use. EVs quantity was determined by the Bradford method (Bio-Rad, Milan, Italy). The EVs derived from the supernatant of MG-63 and from the medium of MG-63DXR30 were named EVs/s and EVs/DXR, respectively.
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6

Photodynamic Therapy on Oral Biofilms

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The photosensitiser, erythrosine-B (Sigma-Aldrich, Germany), was prepared as a filter-sterilised 1mg/ml stock solution in Reduced Transport Fluid (RTF) and stored in the dark at 4 °C. It was then diluted to the required 220 μM concentration, which was found by Tahmassebi et al. (2015 (link)) to be the most effective bactericidal concentration for PDT on in vivo-formed oral biofilms. This was used for all PDT treated groups in this study.
A 400 W-Tungsten filament lamp (Aurora, USA), white light source, was used to activate erythrosine. It emitted 22.7 mW/cm2 of light intensity in the wavelength range 500–550 nm (the region of maximal absorption by erythrosine). Bacterial samples were placed at 30 cm from the lamp and the heat-dissipating water bath (Stuart, SBS40, UK) was positioned between the samples and the lamp to prevent heating.
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7

Assessing hASC Viability and Growth

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hASCs, seeded in a 48-well plate (Corning Incorporated, Corning, NY, USA), were exposed for 24, 72 h (3 days), 6 or 14 days to CB or DMSO. Moreover, hASC recovery was assessed after 24 or 48 h from the end of 24 h CB treatment. At each time point, cells were detached (2 wells/condition for each experimental point) by trypsin–EDTA and counted, as previously described [45 (link)]. Briefly, cells were resuspended in a medium with 50% erythrosine B (Sigma-Aldrich Co., St. Louis, MO, USA) and 0.2% red dye in PBS. Not stained viable cells and red stained dead cells were manually counted, at least twice for each condition, using the Neubauer hemocytometer (BRAND GmbH, Wertheim, Germany) and a light microscope (Nikon Eclipse TS100, Nikon Instruments, Melville, NY, USA). The total numbers of viable and dead cells were calculated according to the manufacturer’s instructions; for each sample, cell viability was obtained calculating the percentage of living cells compared to the total number of cells. Moreover, cell growth rate (gr) was calculated using the following formula: gr = (ln (N(t)/N(0))/t, where N(t) = the number of cells counted after 24 h or 48 h recovery upon CB removal; N(0) = the number of cells counted after 24 h of CB treatment; t = time passed (24 or 48 h).
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8

Photosensitized Dye for Laser Therapy

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Erythrosine B (Sigma, USA) was used as photosensitizing agent. A 1 mM stock solution of EB was prepared in injectable distilled water and stored at 4 °C in the dark no longer than 2 weeks before use. Stock solution was filtrated through a 0.2 μm polycarbonate membrane and further diluted in injectable distilled water to achieve the desired concentration. The light source used in this study was a 530 nm diode laser with a maximum output power of 45 mW.
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9

Fragaria-derived EPDEN Cytotoxicity Evaluation

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To evaluate the possible cytotoxic effect of Fragaria-derived EPDENs, ADMSCs were treated with nanovesicles at different concentrations (0–2–4–9 µg/1 × 104 cells) for 48 h and 120 h. ADMSCs were harvested, and the number of viable cells was evaluated by the erythrosine B (Sigma-Aldrich) dye vital staining. All experiments were performed two times in triplicate.
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10

Synthesis of Photosensitive Polymer Composites

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Polyvinyl alcohol (PVA), N-isopropyl acrylamide (NIPA), N,N-Methylene bisacrylamide (BA), N-Phenylglycine (NPG), Erythrosine B (Er B) and citric acid (CA) were purchased from Sigma-Aldrich, St. Louis, MO, USA. Glycerol was purchased from Fisher Scientific, Hampton, NH, USA, while Fe3O4 20 nm and Fe2O3 20–30 nm MNPs were purchased from GetNanoMaterials, Saint-Cannat, France. All chemicals were used without further modification.
The stock solution of Polyvinyl alcohol (PVA) and Erythrosine B (Er B) sensitising dye was prepared as previously reported [71 (link)]. For PVA solution (10% wt./vol), 10 g of PVA powder was dissolved in 100 mL of deionised (DI) water through magnetic stirring and heating at 75 °C. A dye solution of concentration (0.11% wt./vol) was obtained by dissolving 0.11 g of Er B dye in 100 mL of DI water through magnetic stirring at room temperature.
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