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3 protocols using af2535

1

Multi-immunostaining of Tissue Sections

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Tissue samples were fixed in 4% paraformaldehyde (EMS) at room temperature for 45 minutes, followed by an overnight incubation in 30% weight/volume sucrose solution (Sigma-Aldrich). Samples were then embedded in optimal cutting temperature (Tissue-Tek) and frozen on dry ice. Staining was performed on 10-μm sections by first blocking with 5% donkey serum and 0.1% Tween-20 for 1 hour, followed by overnight incubation with primary antibody diluted in blocking buffer in a humidified chamber. Sections were washed three times in PBS containing 0.1% Tween-20. For immunofluorescence staining, slides were then incubated with DAPI (Life Technologies, 1:1,000) and Alexa fluorophore–conjugated antibodies (Jackson ImmunoResearch). For IHC, slides were first incubated with biotinylated secondary antibodies (Jackson ImmunoResearch) and developed using the ABC HRP and DAB kits per manufacturer protocols (Vectorlabs). Primary antibodies used were as follows: rat anti–Ki-67 (eBioscience, 14–5698–82), rabbit anti–c-Myc (Y69; Abcam, Ab32072), rabbit anti-CD3 (Invitrogen, PA1–29547), rabbit anti-F4/80 (Novus, NBP2–12506), rat antineutrophil (Abcam, NIMP_R14), anti-CD206 (R&D Systems, AF2535), and rabbit anti-Arg1 (Cell Signaling Technology, 93668).
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2

Immunofluorescence Staining of Lung Tissue

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As previously reported (31 (link)) tissues (lungs) were collected and fixed in 4% formalin (overnight at 4°C), washed with PBS and paraffin-embedded before they were cut into 5 μm-thick sections and subjected to H&E staining. For immunofluorescence, sections were deparaffinized, rehydrated and washed in PBS. Antigen retrieval was performed in a pressure cooker (Decloaking chamber, Biocare Medical) in citrate buffer (pH 6.0). Antibodies against CD206 (B&D Systems AF2535), CD11c (Cell Signaling 97858) Ki67 (AbCam Ab16667), Vimentin (Cell Signaling 5741), Galectin3 (Santa Cruz Biotechnology sc-23938) and TTF1 (Novus NBP2–32999) were used for immunostaining by incubating sections overnight at 4°C with antibodies (diluted in Dako antibody diluent). Alexa Fluor 488- or Alexa Fluor 594-conjugated secondary antibodies were added for 2h at room temperature (Molecular Probes), and nuclei were counterstained using SlowFade Gold Antifade reagent (Vector) using 4′,6-diamidino-2-phenylindole (DAPI, Vector). Image data were obtained using an Olympus TH4–100 microscope and Slidebook 4.1 software. For quantification, Ki67-, Lag3- and Vimentin-positive cells were counted in five random (× 40 magnification) fields per lung. Staining was scored on the basis of intensity scale in which + represents low/medium staining and ++ high intensity.
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3

Multiplex Immunofluorescence Analysis of Mouse Tumor Sections

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After deparaffinization and rehydration, mouse tumor sections were incubated with antigen retrieval solution (Dako, S1699) at 95°C for 20 min. Sections were blocked with 5% horse serum for 1 hour and incubated with anti-Mac3 (1:10; BD Biosciences, 550292), anti-CD206 (1:100; R&D Systems, AF2535), anti-CD8a (1:100; Cell Signaling Technology, 98941), or anti-GrzB (1:100; Abcam, ab255598) antibody overnight at 4°C. After washing with PBS, sections were stained with Alexa Fluor 488– or Alexa Fluor 568–conjugated IgGs (1:500; Life Technologies) or tyramide signal amplification plus systems (Akoya Biosciences, NEL744001KT/NEL741001KT) for 1 hour at room temperature. Images were acquired using an Axio Imager microscope (Zeiss) equipped with an AxioCam 506 monochrome charge-coupled device camera (Zeiss).
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