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5 protocols using anti b raf sc 5284

1

Dynein Intermediate Chain Antibody Detection

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Anti-dynein intermediate chain (DIC) (mAb 1685) was from Chemicon (Billerica, MA). Anti-phospho-p44/42MAPK (phospho Erk1/2; 4370S), anti-p44/42 MAPK (Erk1/2; 4780), anti-phospho-MEK1/2 (9121S), anti-phospho-JNK (9251S) were from Cell Signaling Technology (Beverly, MA). The mouse anti-Smad2 (610843) and the mouse p150Glued Ab (610474) were from BD Biosciences Transduction Laboratories (San Jose, CA). Anti-B-Raf (sc-5284) was from Santa Cruz Biotechnology (Santa Cruz, CA). Anti-pan-Ras (MAB5195) was from Millipore (Bedford, MA), whereas anti-RRas (C-8) (SC-166221) was from Santa Cruz Biotechnology (Santa Cruz, CA). Rabbit monoclonal DYNLL1 Ab (ab51603) was from Abeam (Cambridge, MA). TGFβ1 was purchased from R & D Systems (Minneapolis, MN). Gel filtration standards (151-1901) were purchased from Bio-Rad (Hercules, CA). Our km23-1 antibodies (Abs) (27-43 for Western blotting; 1-15 for immunofluorescence) were produced as previously described (Jin et al., 2007 (link)).
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2

Signaling Pathway Analysis Protocols

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Western blot, immunoprecipitation and in vitro kinase assays were performed as described1 (link). Antibodies used include: anti-p217/p221-MEK1/2 (p-MEK1/2) (no. 9154), anti-p202/p204-ERK1/2 (p-ERK1/2) (no. 4370), anti-MEK1/2 (no. 4694), anti-ERK1/2 (no. 4696), anti-p-RSK (no. 9346) from Cell Signaling; anti-V5 (R960-25), ThermoFisher Scientific; anti-BRAF (sc-5284), Santa Cruz Biotechnology; anti-Flag (F3165) Sigma; anti-CRAF (610152), BD Transduction Laboratories; anti-p-CRAF S338 (05-538), Millipore; anti-RAS from the active RAS pull-down and detection kit (ThermoFisher Scientific, no. 16117). For immunoprecipitations of tagged proteins we used: anti-V5 agarose affinity gel (Sigma, A7345), anti-Flag M2 affinity gel (Sigma, F1804), protein G agarose gel (ThermoFisher Scientific, no. 15920010).
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3

Cell Lysis and Western Blot Analysis

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EBC lysis buffer was prepared to lyse cell as follows: 50 mM Tris (pH 7.5), 150 mM NaCl, 0.5% NP-40, 1 mM Complete Protease Inhibitors (Roche Diagnostics, Risch-Rotkreuz, Switzerland), and 1 mM Phosphatase Inhibitor Cocktail III (Sigma-Aldrich). The cell lysate was mixed with Laemmli sample buffer then used to perform Western blot analysis following the procedures as described previously (Long et al., 2012 (link)). The following primary antibodies were used: anti-BRAF (sc-5284; Santa Cruz Biotechnology, Dallas, TX), anti-ERK3 (ab53277; Abcam, Cambridge, UK), anti-pERK1/2 (4370; Cell Signaling Technology, Danvers, MA), anti-Rictor (A300-459A-M; Bethyl Laboratories, Montgomery, TX), anti-sin 1 (A300–910A-T; Bethyl Laboratories), anti-β-actin (3700; Cell Signaling Technology), anti-GAPDH (ab181602; Abcam). β-Actin and GAPDH were used as loading control. Western blot imaging was performed and analyzed by Amersham Imager 600 and ImageQuantTL software (GE Healthcare Life Sciences, Chicago, IL).
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4

Western Blot and Kinase Assays

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Western blot, immunoprecipitation, and in vitro kinase assays were performed as previously described (11 (link)). The following antibodies were used: anti-p217/p221-MEK1/2 (p-MEK1/2) (#9154), anti-p202/p204-ERK1/2 (p-ERK1/2) (#4370), anti-MEK1/2 (#4694), anti-ERK1/2 (#4696), anti-p380-p90RSK(p-RSK) (#9341), GAPDH (#2118) from Cell Signaling, anti-V5 (R960–25) from Thermo Fisher Scientific and anti-BRAF (sc-5284) and anti-cyclin D1 (M-20) from Santa Cruz Biotechnology.
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5

SDS-PAGE Immunoblotting Protocol

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For SDS–PAGE analysis, the membranes were blocked with 5 % milk in PBS Tween 20 (10 %) for 30 min at room temperature. Membranes were then probed overnight at 4 °C with the appropriated primary antibodies: anti-MITF (HPA003259, Sigma), anti-HA (3F10, Roche), anti-myc (9E10, Santa Cruz), anti-flag (M2, Sigma), anti-ARAF (4432, Cell Signaling), anti-BRAF (sc5284, Santa Cruz), anti-CRAF (610151, BD Biosciences), anti-ERK (sc93, Santa Cruz), anti-pERK (M8159, Sigma), anti-laminA/C (10298-1-AP, Proteintech), anti-MEK1 (sc219, Santa Cruz) and anti-β-actin (A1978, Sigma) antibodies. Antigen-antibody complexes were detected by horseradish peroxidase-coupled secondary antibodies followed by enhanced chemiluminescence. Signals were acquired using a cooled-CDD camera (Fusion FX Spectra, Vilber).
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