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17 protocols using cd14 m5e2

1

Phenotypic Characterization of Immune Cells

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Monocyte purity, proper Mo-DC differentiation and the basal state of activation of both cells were assessed by flow cytometry using the following anti-human monoclonal antibodies: CD14 (M5E2, Biolegend, San Diego, CA, USA), CD1b (SN13, Biolegend), CD1d (51.1, Biolegend), CD11c (3.9, eBioscience), CD80 (2D10, Biolegend), HLA-DR (LN3, eBioscience).
iNKT and T cell determinations were performed in total PBMCs or in CD14 fractions, using CD1d-PBS57 tetramers (NIH Tetramer Core Facility, Emory University, Atlanta, GA, USA) and the following anti-human monoclonal antibodies: CD3 (OKT3, eBioscience), CD4 (OKT4, Biolegend), and CD8 (RPA-T8, eBioscience). The purity of T cell clones VM-D5 and JS63 was assessed by using CD1d-PBS57 tetramers (NIH Tetramer Core Facility, Emory University, Atlanta, GA, USA) together with anti-human CD3 (OKT3, eBioscience) monoclonal antibody. The purity of T cell clones s33d, GG33A, and DS1C9b was assessed by using anti-human TCR Vβ13.1 (IMMV222), Vβ18 (BA62.6), and Vβ7.1 (ZOE), monoclonal antibodies from Immunotec (Immunotec Research Inc, Canada). Cells were acquired in a FACS Canto II (BD Biosciences, San Diego, CA, USA) using the BD FACSDiva™ software (BD Biosciences). Data analysis was performed with FlowJo® v10 (FlowJo LLC, Ashland, OR, USA).
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2

Multiparameter Immune Cell Profiling

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CD45 (HI30); MerTK (2B10C42); CD14 (M5E2); CD64 (10.1); CCR2 (K036C2); HLA-DR (L243).
All antibodies listed above were purchased from Biolegend with the exception of CCR2 (475301) (R&D Systems), Lyve1 (ALY7) (eBiosciences) and B220 (RA3–6B2); BV421-SA (BD Biosciences). Antibody clone is provided in parentheses. For more details see the Life Sciences Reporting Summary
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3

Comprehensive Immune Cell Profiling

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Cells harvested after overnight incubation were stained following standard protocols. Experiments used antibodies specific for human FcR block (BioLegend #422302), CD11c (Bu15, BioLegend #337214), CD80 (2D10, BioLegend #305220), CD86 (Bu63, BioLegend #374210) HLA-DR (L243, BioLegend #307629), HLA-A,B,C (W6/32, BioLegend #311410), CD14 (M5E2, BioLegend #301828), CD63 (H5C6, BioLegend #353007), CD61 (VI-PL2, BioLegend #336416), CD41/CD61 (PAC-1, BioLegend 362804), CD62p (AK4, BioLegend #304906), mTCRb (H57-597, BioLegend #109206), CD4 (OKT4, BioLegend #317428), CD8 (SK1, BioLegend #344704), and human CD3-APC (Clone OKT3, BioLegend). Color-matched isotype control antibodies were obtained from the same vendors. Flow cytometry was performed with a Stratedigm flow cytometer with electronic gates set on live cells by a combination of forward and side light scatter and 7-AAD (BioLegend), EMA (Invitrogen), Zombie Aqua (BioLegend), or Zombie NIR (BioLegend) exclusion. A minimum of 3 × 104 events were collected per sample, and data were analyzed with FlowJo software (FlowJo LLC).
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4

Multiparametric Immunofluorescence Profiling

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Frozen skin sections were fixed with acetone and blocked with 10% normal goat serum (Vector Laboratories) for 30 minutes. Primary antibodies were incubated overnight at 4°C and amplified with the appropriate Alexa Fluor® 488 (A-488) or 568 (A-568) conjugated secondary antibody for 30 minutes at room temperature. Antibodies used are: IL-32αβγδ (KU32–52, BioLegend), CD3 (SK7, BD Biosciences), CD4 (SK3, BD Biosciences), CD8 (SK1, BD Biosciences), hNKp46 (195314, R&D Systems), CD20 (L27, BD Biosciences), CD14 (M5E2, BioLegend), CD11c (B-ly6, BD Pharmingen), CD303 (AC144, Miltenyi Biotec), and CD163 (5C6-FAT, Acris Antibodies).
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5

Phenotypic Profiling of Monocytes and DCs

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1x106 cryopreserved PBMC were thawed then washed twice in FACS buffer and surface stained using the following antibody cocktail: CD14 (M5E2, Biolegend), CD16 (3G8, Biolegend), CD11b (ICRF44, Biolegend), HLA-DR (L243, Biolegend), CD40 (5C3, BD Pharmingen), CD62L (DREG-56, BD Pharmingen), CD64 (10.1, Biolegend), CD163 (GHI/61, Biolegend), CXCR6 (K041E5, Biolegend), IFNAR (85228, R&D Systems), CD11c (3.9, ThermoFisher Scientific) and CD123 (6H6, Biolegend) for the detection of various monocytic and dendritic cell subsets. Samples were then acquired on the Attune NxT acoustic focusing cytometer (Life Technologies). Data were analyzed using FlowJo v10 (TreeStar, Ashland, OR USA).
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6

Flow Cytometric Profiling of PBMCs

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Frozen PBMCs were thawed, washed in FACS buffer (2% FBS, 1mM EDTA in PBS), and counted on TC20 (Biorad) before surface staining using two independent flow panels. For the innate panel, the following antibodies were used: CD3 (SP34, BD Pharmingen) and CD20 (2H7, BioLegend) for the exclusion of T & B lymphocytes, respectively. We further stained for CD56 (HCD56, Biolegend), CD57 (HNK-1, BioLegend), KLRG1 (SA231A2, BioLegend) CD16 (3G8, BioLegend), CD14 (M5E2, BioLegend), HLA-DR (L243, BioLegend), CD11c (3.9, ThermoFisher Scientific), CD123 (6H6, BioLegend) and CD86 (IT2.2, BioLegend). For the adaptive panel, the following antibodies were used: CD4 (OKT4, BioLegend), CD8b (2ST8.5H7, Beckman Coulter), CD45RA (HI100, TONBO Biosciences), CCR7 (G043H7, BD Biosciences), CD19 (HIB19, BioLegend), IgD (IA6–2, BioLegend), CD27 (M-T271, BioLegend), KLRG1 (SA231A2, BioLegend) and PD-1 (Eh12.2h7, BioLegend). Cells were stained with Ghost Dye viability dye (TONBO biosciences) for 30 minutes at 4C per manufacturer’s instructions, washed, surface stained with either innate or adaptive panels for 30 minutes at 4C. Samples were then washed and analyzed on Attune NxT Flow Cytometer (ThermoFisher Scientific, Waltham MA).
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7

Dendritic Cell Differentiation Protocol

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RPMI 1640 and low-endotoxin FBS were obtained from Lonza (Walkersville, MD, USA). Recombinant human GM-CSF and human IL-4 were purchased from Miltenyi Biotec (Bergisch Gladbach, Germany); Flow cytometric analysis was performed using the following mouse anti-human antibodies: CD83 (HB15e) and CD1a (HI149) (Becton Dickinson, San Jose, CA, USA); CD80 (2D10), CD86 (T2.2), HLA-DR (L243) and CD14 (M5E2) (Biolegend, San Diego, CA, USA). PLGA (poly[DL-lactide-co-glycolide] 50:50 lactide-glycolide ratio, CAS 26780-50-7), PVA (poly[vinyl alcohol], CAS 9002-89-5), Acetone (≥99% purity, 1.00013), Dimethyl sulfoxide (DMSO, ≥99% purity D-5879), Oxyresveratrol (≥97% purity, 91211) were purchased from Sigma-Aldrich, (St. Louis, MO, USA).
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8

Degranulation Assay for NK and CD8+ T Cells

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Degranulation of human NK cells and CD8+ T cells were performed as following; 3×105 PBMC were incubated for 3 hours in vitro alone, in presence of 1:1 K562 cells, or with phorbol 12-myristate 13-acetate (50 ng/mL; Sigma-Aldrich), and Ionomycin (250 ng/mL; Sigma-Aldrich). Cells were then stained for surface staining including CD3 (SK7), CD8 (RPA-T8), CD56 (MEM188), CD16 (CB16), CD107a (LAMP-1) and CD107b (H4B4) (all from Invitrogen, Thermofisher) and CD14 (M5E2, from Biolegend) and analyzed by flow cytometer CANTO II (BD Bioscience).
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9

Ex vivo Phosphorylation Assays of PBMCs

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For ex vivo phosphorylation assays, thawed PBMC were plated at 250,000 cells per well in 96 well polypropylene plates and rested for 2 h at 37 °C, 5% CO2. PBMC were fixed with pre-warmed (37 °C) Cytofix (BD Biosciences) for 20 min at 37 °C, 5% CO2 and permeabilized with Perm III buffer (BD Biosciences) overnight at −20 °C. Cultures were subsequently stained with CD3 (UCHT1, BD Biosciences), CD20 (H1, BD Biosciences), CD14 (M5E2, Biolegend), CD16 (B73.1, BD Biosciences), phospho-IRF3 (Ser 396, Bioss), phospho-NFkB p65 (Ser 529, BD Biosciences) in PBS for 1 hour at room temperature, washed with PBS and resuspended in 250 μl PBS.
For phosphorylation assays after LPS stimulation, PBMC were plated as above and stimulated with 100 ng/ml LPS for a total of 1 hour. Samples were fixed at 0, 5, 15, 30, 45, and 60 min after LPS addition for 20 min at 37 °C, 5% CO2, and stained as above.
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10

Bacterial Agonist-Induced PBMC Cytokine Response

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1x106 cryopreserved PBMC were thawed, washed, and then stimulated with a bacterial agonist cocktail or left unstimulated. The bacterial agonist cocktail consisted of a combination of 2ug/mL Pam3CSK4 (TLR1/2 agonist, InvivoGen), 1ug/mL FSL-1 (TLR2/6 agonist, Sigma Aldrich), and 1ug/mL LPS (TLR4 agonist from E. coli 0111: B4, InvivoGen). Samples were cultured for 1 hour before adding protein transport inhibitor (Brefeldin A) and incubated for an additional 7 hours at 37C. Cells were then washed twice in FACS buffer and surface stained using the following antibody cocktail – CD14 (M5E2, Biolegend) and HLA-DR (L243, Biolegend) for 30 minutes at 4C. Stained cells were then fixed and permeabilized using Fixation buffer (Biolegend) and incubated overnight with a cocktail of intracellular antibodies – IL-6 (MQ2-6A3, Biolegend), and TNFɑ (Mab11, eBioScience). Samples were then acquired on the Attune NxT acoustic focusing cytometer (Life Technologies). Data were analyzed using FlowJo v10 (TreeStar, Ashland, OR USA).
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