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9 protocols using c6h5na3o7 2h2o

1

Synthesis of Au-NYCTO Hybrid Particles

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Au–NYCTO hybrid particles were fabricated using a modified Turkevich's method. First, the obtained NYCTO particles were dispersed in deionized water with the aid of ultrasonication for 0.5 h. Next, this NYCTO solution was stirred for 0.5 h at room temperature. After that, 1 mM of HAuCl4·3H2O was dissolved in this solution and then temperature of solution was increased to 100 °C with constant stirring. Next, C6H5Na3O7·2H2O (Sigma-Aldrich) was continuously dropped into the solution. To ensure the reaction was completed, the light brown solution was stirred until a dark brown solution was formed. After that, the dark brown solution was centrifuged at 8500 rpm and was washed several times with deionized water. Finally, the resulting powder was freeze-dried to produce Au–NYCTO particles.
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2

Synthesis and Functionalization of Silica and Gold Nanoparticles

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The reagents used for the synthesis of silica nanoparticles include tetraethyl orthosilicate (TEOS, 98%, Acros Organics), ammonia hydroxide (NH4OH, 28–30 wt%, Acros Organics), absolute ethanol (C2H5OH, VWR Chemicals) and deionized water (equipment Biopure 7/15 from Elga, 15 MΩ cm). The silane 3-aminopropyltriethoxysilane (APTES, 98%, Alfa Aesar) was used to functionalize the surface of the synthesized silica nanoparticles with an amino (-NH2) terminal group.
The reagents used for functionalization with gold nanoparticles include hydrogen tetrachloroaurate (III) also called gold (III) chloride (HAuCl4*x.H2O, 99.9%, Alfa Aesar), sodium hydroxide (NaOH, anhydrous, ≥98%, Sigma Aldrich), trisodium citrate (C6H5Na3O7*2. H2O, ≥99%, Fisher Scientific), sodium borohydrate (NaBH4, 99%, Acros Organics) and potassium carbonate (K2CO3, 99%, Alfa Aesar).
Tannic acid (TA, Sigma Aldrich) was also used for the synthesis of gold nanoparticles. Hydrochloric acid (HCl, 36%, Alfa Aesar) was used in addition for zeta titration and for adjusting the pH of the silica nanoparticles solution.
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3

Synthesis of Controlled Gold Nanoparticles

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Reagents used were Tetrachloroauric(III) acid (HAuCl4 ≥ 99%, Sigma Aldrich), Trisodium citrate dihydrate (C6H5Na3O7·2H2O, ≥99%, Sigma Aldrich), and deionized water (18MΩ, ≤4.3 μS/cm, Millipore). Ultrasonic Homogenizer 300VT BioLogics, Inc. was used with titanium sonotrode (diameter = 9.5 mm, length = 108 mm). Temperature increasing was detected using an immersed thermocouple (K Type) in the irradiated solutions. The pH values were measured using HANNA Instruments, HI-2210-02 Bench Top pH Meter with a glass electrode. UV−Vis spectra were obtained from a Thermo Scientific UV−Vis GENESYS 10S spectrophotometer. TEM observation and HRTEM images were performed in an image-corrected FEI Titan3 at 300 kV. FFT images were obtained using Gatan DigitalMicrograph software.
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4

Synthesis of 50 nm Gold Nanoparticles

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Au NPs measuring 50 nm were synthesized by the Brown method [28 (link),29 (link)]. Briefly, 1.34 mL of 0.22 M of hydroxylamine hydrochloride (NH2OH ∙HCl, ACS reagent, 98%, Sigma-Aldrich, Buchs, Switzerland) was added to a solution containing 144 mL of gold (III) chloride trihydrate (0.25 mM, HAuCl4∙3H2O, ≥99.9%, Sigma-Aldrich, Buchs, Switzerland), as-prepared 15 nm gold seeds ([Au] = 0.0125 mM) and sodium citrate tribasic dihydrate (0.5 mM NaCit, C6H5Na3O7∙ 2H2O, ≥98%, Sigma-Aldrich, Buchs, Switzerland) under vigorous magnetic stirring. After 15 min under magnetic stirring, the NPs were cleaned by centrifugation at 3500 rpm for 20 min and redispersed in 0.5 mM NaCit. Au seeds measuring 15 nm were prepared by the well-known Turkevich method [30 (link)]. Briefly, 0.5 mM HAuCl4 was boiled in the presence of 1.7 mM NaCit for 15 min. Au NPs measuring 15 nm were cooled down to room temperature and stored at 4°C overnight before using them to synthesize the larger particles.
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5

Synthesis of Citrate-Capped Gold Nanoparticles

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The Turkevich method was used to synthesize gold nanoparticles (AuNPs).52 (link) Namely, a suspension of 0.5 mM gold (99% tetrachloroauric acid, HAuCl4·3H2O, Sigma-Aldrich, Switzerland) and 1.5 mM of sodium citrate (≥98%, C6H5Na3O7·2H2O, Sigma-Aldrich, Switzerland) was brought to boiling and subsequently cooled down to room temperature resulting in the formation of 16 nm AuNPs capped with citrate. AuNPs of 41 nm were synthesized through the reduction of gold salt (0.25 mM) mixed with hydroxylamine hydrochloride (0.2 M) in the presence of sodium citrate (0.5 mM) and as-prepared citrate capped 16 nm AuNPs (0.0125 mM). The two AuNP size-types synthesized were surface-functionalized with polyvinylpyrrolidone (PVP, 8 kDa (C6H9NO)n, Acros Organics, Switzerland), by mixing 0.47 mM of Au sols with 2.65 mM PVP aqueous solution for the 16 nm AuNPs (labelled as Au16) and with 1.1 mM PVP for the 41 nm AuNPs (labelled as Au41).53 (link)
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6

Synthesis of Citric Acid-Capped Magnetite Nanoparticles

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Figure 2 is a schematic
illustrating
the in-house synthesis of the Fe3O4 NPs, which
was adopted from Hui et al. with minor changes.110 (link) In brief, 4 mmol of NaOH (Merck Co., Ltd., Germany), 1
mmol of citric acid trisodium salt dehydrate (C6H5Na3O7·2H2O Merck Co., Ltd.,
Germany), and 20 mmol of NaNO3 (Merck Co., Ltd., Germany)
were dissolved in 19 mL of deionized water. Then, 1 mL of a 2 M FeSO4·7H2O (Merck Co., Ltd., Germany) solution
was surcharged rapidly to the admixture which was heated to ∼100
°C under mixing in a capped vessel for 120 min. The black precipitate
of citric acid-capped Fe3O4 was collected at
the end of heating, which was washed with deionized water and left
to dry under ambient conditions for 60 min. More details can be found
in our previous study.8 (link)
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7

Cellulose Acetate Membrane Fabrication

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Cellulose acetate (CA; average acetyl content of 39.7 wt%, average MW~50,000 (GPC) (Sigma Aldrich, Burlington, MA, USA) has been used as a polymer component for membrane preparation. The N, N-dimethylformamide (DMF) purity of 99% (Sigma Aldrich, Burlington, MA, USA) has been used as a solvent during polymer blending. Laboratory synthesized Zinc oxide (ZnO) has been employed as a membrane additive. A Glycerol (Honeywell, Morristown, NJ, USA) solution was also used in membrane washing operations. For the synthesis of nanostructured zinc nitrate hexahydrate Zn(NO3)2·6H2O (Lach-Ner, Tovární, Neratovice), urea >99% purity (NH2)2CO (Sigma Aldrich, Burlington, MA, USA), zinc acetate dihydrate >99% purity Zn(CH3COO)2·2H2O (Sigma Aldrich, Burlington, MA, USA), hexamethylenetetramine >99% purity (HMTA)C6H12N4 (Merck, New York, NY, USA), PEI, sodium citrate dihydrate >99% purity C6H5Na3O7·2H2O (Merck, New York, NY, USA) has been used. Methylene Blue was supplied by local manufacturers who use it for their day-to-day applications. The main components of UV source light were used from a mechanical solar simulator model no. 21117 (Newport, CA, USA).
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8

Inulin Extraction from Jicama and Cabuya

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Jicama (Smallanthus sonchifolius) and cabuya (Agave americana) were used as raw materials for inulin extraction and obtained from the same cultivation zone (Guayllabamba, Pichincha, Ecuador). Jicama (roots) and cabuya (meristem and leaves) were harvested at an approximate age of 8 months and 12 years, respectively. Concerning cabuya leaves, only the first 20 cm (measured from the stem) were studied.
Ethanol, C2H5OH (LAQUIN, ≥96%), and dibasic potassium phosphate trihydrated, K2HPO4·3H2O (Merck, ≥99%), were used to purification process.
d-glucose (BDH, Poole, England, ≥98.5%), d-fructose (BDH, ≥98.9%), trisodium citrate dihydrate, C6H5Na3O7·2H2O (Merck, Darmstadt, Germany, ≥99.5%), sodium metaperiodate, NaIO4 (Merck, ≥99%), potassium iodide, KI (Merck, ≥99%), sodium carbonate (BDH, ≥98%) and sulfuric acid (JT Baker, Phillipsburg, USA, ≥97.99%) were used to measure inulin content in the extract by the spectrophotometric method.
Commercial Inulin (Beneo Orafti® GR, with the degree of polymerization (DP) between 10 and 23 and a Mw of 1680–4100 g/mol) was used as a standard for the spectrophotometric, thermal and spectroscopic analyzes.
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9

Stable Isotope Labeling for Phosphoproteomics

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Stable Isotope Labeling by Amino acids in Cell culture minimal medium consisting of 15 mM (NH4)2SO4, 2 mM CaCl2, 1 μM FeSO4.7H2O, 8 mM MgSO4, 10 μM MnSO4, 27 mM KCl, 0.6 mM KH2PO4, 7 mM C6H5Na3O7⋅2H2O (Merck), 50 mM Tris-HCl pH 7.5 (Sigma–Aldrich) supplemented with 0.5% glucose (AppliChem), 0.67 mM glutamic acid (Merck) and 490 μM tryptophan (Sigma–Aldrich), was used to grow a lysine auxotrophic strain of B. subtilis 168 (also referred to as the wild-type or WT). For labeling purposes, the minimal medium was supplemented with 0.025% of the respective isotopically labeled L-lysineLight, Lys0: 12C614N2 (Sigma–Aldrich); Medium, Lys4: 4,4,5,6-D4; Heavy, Lys8: 13C615N2 (Euriso-Top). An overnight culture grown until an OD600 of 0.5–0.6 was used as a pre-inoculum for the main cultures which were grown at 37°C at 200 rpm and harvested at either the late stationary phase of growth or mid-logarithmic phase of growth. The ΔlysA WT strain was labeled with “Light” lysine, the ΔptkAΔlysA (kinase) strain with “Medium” lysine and the ΔptpZΔlysA (phosphatase) strain with “Heavy” lysine. Cells were harvested by centrifugation at 7000 × g for 10 min. Supplementary Figure 1 depicts the entire (phospho) proteomics workflow employed. A total of four biological replicates were performed for the phosphoproteomics experiments and three biological replicates and the whole proteome analysis.
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