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3 protocols using p53 9282

1

Molecular Mechanisms of Cell Apoptosis

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Adenine, bovine serum albumin (BSA), EDTA, HEPES, Igepal CA-630, PMSF, sulforhodamine B (SRB), Tris, Triton X-100, Tween-20, and protease/phosphatase inhibitor cocktail were obtained from Sigma-Aldrich (St. Louis, MO, USA). Dulbecco’s modified Eagle’s medium (DMEM) and fetal bovine serum (FBS) were purchased from Gibco (Grand Island, NY, USA). Anti-human Bcl-2 (sc-7382), p21 (sc-53870), p53 upregulated modulator of apoptosis (PUMA, sc-374223), cleaved PARP (sc-56196), β-actin (sc-8432) antibodies, and peroxidase-conjugated antibodies against mouse or rabbit IgG (sc-516102, sc-2357) were acquired from Santa Cruz Biotechnology (Santa Cruz CA, USA). Anti-human phosphor(p)-AMPK(T172) (#50081), AMPK (#5832), cleaved caspase-3 (#9664), p-mTOR(S2448) (#2971), p-p38 MAPK (p-p38, #9211), p38 MAPK (p38, #9212), Bax (#2774), mTOR (#2972), and p53 (#9282) antibodies were acquired from Cell Signaling Technologies (Beverly, MA, USA).
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2

Protein Expression Analysis by Western Blot

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Cells were collected and lysed in lysis buffer [100 mM Tris-HCI (pH 6.8), 4% (m/v) sodium dodecylsulfonate (SDS), 20% (v/v) glycerol, 200 mM 2-mercaptoethanol, 1 mM phenylmethyl sulfonylfluoride and 1 g/ml aprotinin] for 30 min on ice. The lysates were separated using centrifugation at 4°C for 15 min at 3,913 × g. The total protein concentration in the supernatants was detected using the BCA Protein assay kit (Beyotime Institute of Biotechnology). Proteins (20 µg) were separated using 8–15% SDS-PAGE and subsequently transferred to nitrocellulose membranes. These were saturated with 5% milk in Tris-buffered saline and 1% Tween-20 (TBST) and incubated with the following primary antibodies in a diluent overnight at 4°C: p53 (9282), Bcl-2 (2876), Bax (2772), TGF-β (3711), TGF-βRII (11888), Smad3 (9513), p-Smad2/3 (8828) and GAPDH (2118) (all 1:1,000; Cell Signaling Technology). Membranes were washed three times with TBST and incubated with HRP-conjugated goat anti-rabbit IgG (E030120-01; EarthOx Life Sciences) for 1 h at room temperature, followed by washing four times with TBST. An enhanced chemiluminescence kit (GE Healthcare Life Sciences, Chalfont, UK) was added to the membrane and detection was performed using an Odyssey® CLx Infrared Imaging system (LI-COR Biosciences, Lincoln, NE, USA).
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3

Comprehensive Antibody Panel for Cell Signaling

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The following primary antibodies were used: p53 (9282), pSMAD2 (3101), NEDD8 (2754), SET8 (C18B7), SUMO-1 (4930), Cell Signaling; p53 (FL-393 sc-6243), p21 (C-19; sc-397), PAI-1 (H-135; sc-8979), BCL-6 (N-3; sc-858), CUL1 (H-213 sc-11384) and CUL4 (H-66 sc-10782), Santa Cruz; FBXO11 (A301-178A and A301-177A), Bethyl Laboratories; MMP2 (RPCA-MMP2), EnCor Biotechnology Inc.; CDT2 (OAAB00993), AVIVA Systems Biology; pSMAD2 (AB3849), Millipore; actin (A 2066), Sigma. RAW 264.7 whole-cell lysate (sc-2211), Santa Cruz and A549 cell lysate, Cell Signaling were used as positive controls for the antibodies.
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