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9 protocols using 4 6 diamidino 2 phenylindole dapi

1

Corneal Keratocyte Apoptosis Analysis

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The remaining halves of the five corneal buttons were used to evaluate keratocyte apoptosis, which was detected using TUNEL assays. A TUNEL assay kit (Roche) was used in this study, and cryosections of cornea were subjected to analysis according to the manufacturer's instructions. The tissues were then stained with 4′,6-diamidino-2-phenylindole (DAPI; ZSbio, Beijing, China). The density of keratocytes was analyzed using ImageJ software. A sample field (×200 magnification with a size of 877 × 660 μm) was imaged in each corneal sample, and the image was converted to white and black by ImageJ software (Fig. 2B). Keratocytes are indicated by black dots of appropriate size and were automatically counted by ImageJ.
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2

Immunofluorescent Staining of Cardiomyocytes

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Cardiomyocytes cultured on coverslips were seeded in 6-well plates and fixed in 4% paraformaldehyde in PBS for 15 min at room temperature, followed by washing with PBS, three times per 5 min. Then, cardiomyocytes were incubated with 0.1% TritonX-100 in PBS for 30 min, followed by washing with PBS, three times per 5 min again. After blocking with 1% bovine serum albumin in PBS for 1 h, the cells were incubated in BSA blocking buffer containing primary antibody-α-SMA (1 : 200, Boster, China), and the cells were washed and then incubated in secondary anti-mouse antibody (1 : 200; Boster, China) for 1 h. Furthermore, cardiomyocytes were incubated for 15 min with 4,6-diamidino-2-phenylindole (DAPI; ZSGB, Beijing, China) for nuclear staining, and fluorescence micrographs were obtained using Olympus FSX100 microscope.
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Immunofluorescence Staining of Fibroblasts

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Fibroblasts cultured on coverslips were seeded in 12-well plates and fixed in 4 % paraformaldehyde in PBS for 15 min at room temperature, following by washing with PBS, three times per 5 min. Then, fibroblasts were incubated with 0.1 % Triton X-100 in PBS for 30 min, following by washing with PBS, three times per 5 min again. After blocking with1 % bovine serum albumin in PBS for 1 h, the cells were incubated in BSA blocking buffer containing primary antibodies-α-SMA (1:200; Abcam), the cells were washed and then incubated in secondary antibodies anti-rabbit (1:200; Life Technologies, Carlsbad, CA, USA) for 1 h. Furthermore, fibroblasts were incubated for 15 min with 4,6-diamidino-2-phenylindole (DAPI; ZSGB, Beijing, China) for nuclear staining, and fluorescence micrographs were obtained using an Olympus FSX100 microscope.
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Immunofluorescence Analysis of Angiogenic Factors

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Mice were transcardially perfused with normal saline, followed by 4% paraformaldehyde solution for 10 min at 14 days after MCAO. Brains were fixed overnight at 4 °C, soaked in 30% sucrose solution, frozen, and cut into 10-μm-thick sections (Leica, Wetzlar, Germany). BrdU/von Willebrand factor (vWF), VEGF/vWF, VEGFR2/vWF, Ang-1/vWF, and Tie-2/vWF were detected by double immunofluorescence staining as described in our previous study [23 (link)]. Cellular nuclei were stained with 4′,6-diamidino-2-phenylindole (DAPI, Zsbio, Beijing, China) at room temperature.
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5

Quantitative Analysis of Corneal Innervation

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After treatment for 72 h, the mice were sacrificed, and the eyeballs (n = 3) were enucleated and subsequently fixed in 4% immunohistochemical fixation solution for 2 h. After rinsing with phosphate buffer solution (PBS) three times, all of the corneas were clipped along the margin of the keratosclera and then incubated with anti-β3-tubulin (1:500, ab52623, Abcam, Cambridge, United Kingdom), anti-SP (1:400, ab10353, Abcam) and anti-CGRP (1:400, 14959s, Cell Signaling Technology, United Kingdom) for 48 h at room temperature. After washing with PBS, the cornea was incubated with Alexa Fluor® 488 goat anti-guinea pig IgG H&L (1:500, ab10353, Abcam) and Alexa Fluor® 594 goat anti-rabbit IgG H&L (1:400, ZF-0516, ZSGB-BIO, China) at 4 °C overnight. After counterstaining with 4,6-diamidino-2-phenylindole (DAPI, ZSGB-BIO, China) to stain the nuclei, all of the images were captured by using a fluorescence microscope (Nikon, Tokyo, Japan). To compare the changes in corneal innervation, Image J and Neuron J software were used to calculate the nerve length in the positive area for β3-tubulin staining per sample. In the experiment, one representative image in the center of the cornea and four replicates captured in the peripheral area of cornea from three independent experiments per group were used for analysis.
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6

Immunofluorescence Staining of Fibroblasts

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Immunofluorescence staining was performed on well-cultured fibroblasts. In brief, after fixation, serum blocking and hybridization with primary antibodies overnight, the cells were incubated with fluorescein isothiocyanate (FITC)-conjugated secondary antibodies (1:100 dilution; KeyGEN, Nanjing, China) for 1 h, and the nuclei were stained with 4′,6-diamidino-2-phenylindole (DAPI; ZSGB-BIO, Beijing, China). The cells treated with only secondary antibodies were considered the negative control (NC). The fluorescent expression of the target markers and nuclei were evaluated and imaged using a Leica confocal laser microscope.
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7

Immunofluorescence Staining of Activated Cells

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Cells at a density of 1 × 105 cells/well were seeded into 12-well plates. After exposure to the THP treatments, the cells were fixed with 4% paraformaldehyde for 30 min at room temperature. Then, the cells were made transparent with 1% PBST for 10 min at 4℃. After the PBST was aspirated, the cells were blocked with 4% bovine serum albumin (BAS) for 30 min and then incubated with a primary antibody against p-P38 (1:200, ImmunoWay, USA), iNOS (1:200, Proteintech, USA), and GFAP (1:200, CST, USA), in antibody dilution buffer overnight at 4 °C. The next day, the cells were incubated with a fluorochrome-conjugated anti-rabbit secondary antibody (1:200, ZSGB-BIO, China) for 2 h at room temperature in the dark. Subsequently, the cells were stained with 4′,6-diamidino-2-phenylindole (DAPI, 1 μg/ml, ZSGB-BIO, China) for 15 min. Images were obtained under a fluorescence microscope. Quantitative analysis of the immunofluorescent staining was performed using Image J.
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8

Quantifying Pulmonary Vascular Remodeling

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Serial sections in thickness of 4 μm were cut through the paraffin-embedded left lung lobe and stained with HE (Beijing Dingguo Changsheng Biotechnology, China). Anti-α-SMA (1:200, Sigma-Aldrich, USA) and FSTL1 (1:200, Santa Cruz, USA) were visualized by Alexa Fluor 594-labelled goat anti-mouse IgG and Fluorescein-conjugated rabbit anti-goat IgG (ZsBio, China), respectively, with nuclei mounted by 4′,6-diamidino-2-phenylindole (DAPI, ZsBio, China). Blood vessels were screened with a microscope digital camera (Nikon, Japan) and analyzed by NIS-Elements system (Nikon, Japan). Vascular remodelling was evaluated by MT% and numbers of completely muscularized arterioles52 (link)53 (link). Briefly, MT% was expressed as a percentage of ((external diameter - internal diameter)/external diameter). Arterioles exhibiting more than 75% of circumference positive for α-SMA were identified as completely muscularized arteries and their numbers were totaled in every 10 high-power (×400) fields. Transversely cut arterioles were included for measurement, with the exclusion of obliquely cut ones and pulmonary veins.
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9

Osteocalcin and GFP Immunofluorescence

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Sections were incubated with the mixture of rabbit anti-Osteocalcin (OCN) (Santa Cruz) and mouse anti-GFP (Santa Cruz). The mixture of DyLight 488-Conjugated Goat Anti-Rabbit (Abbkine, Calif, USA) and DyLight 549-Conjugated Goat Anti-Mouse (Abbkine, Calif, USA) secondary antibodies was used to bind primary antibodies. Then the sections were mounted using mounting medium with 4',6-diamidino-2phenylindole (DAPI) (ZSGB-Bio, Beijing, China), and photographed.
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