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Rf 6000 fluorescence spectrophotometer

Manufactured by Shimadzu
Sourced in Japan

The Shimadzu RF-6000 is a fluorescence spectrophotometer designed for accurate and sensitive measurement of fluorescence signals. It features a high-intensity xenon lamp, a monochromator for wavelength selection, and a high-sensitivity photomultiplier tube detector. The RF-6000 is capable of measuring emission and excitation spectra, as well as fluorescence intensity.

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34 protocols using rf 6000 fluorescence spectrophotometer

1

Fluorescence Spectrum Analysis

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The fluorescence spectra were captured using an RF-6000 fluorescence spectrophotometer (Shimazu, Kyoto, Japan) with an excitation wavelength of 492 nm and an emission wavelength ranging from 510 to 650 nm. Both excitation and emission had bandwidths of 5 nm. A pHS-3E pH meter (Yoke, Shanghai, China) was used for the pH measurements, while a PR124ZH/E electronic balance (Ohaus, Changzhou, China) was used for weighing. An MTH-100 constant-temperature mixing instrument (Hangzhou Miu Instruments Co., Ltd., Hangzhou, China) was used for incubation baths.
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2

FRET Biosensors in Crowded Environments

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Both mCit-mCer sensor and CRONOS were challenged with crowding macromolecules, polyethylene glycol (PEG) of various molecular weights, Ficoll PM400 and D-glucose dissolved in PBS at different concentration (5-40% weight/volume) as indicated. Each sensor protein was added to the solution at final 2-3 µg/ml otherwise mentioned. After mixing the solution and sensor, the FRET efficiency was assessed by RF-6000 fluorescence spectrophotometer (Shimazu, Kyoto, Japan). For mCer-mCit sensor, the donor mCer was excited at 433 nm and the emission spectra was measured. For CRONOS, the donor mNG was excited at 506 nm and the emission spectra was measured. To calculate the FRET ratio of mCer-mCit sensor, the fluorescence intensity of 527 nm was divided by the fluorescence intensity of 476 nm. To calculate the FRET ratio of CRONOS, the fluorescence intensity of 588 nm was divided by the fluorescence intensity of 522 nm.
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3

Pharmacokinetics of DiR-Loaded PLGA Nanoparticles

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The C57BL/6 mice were randomly divided into four groups (DiR, DS‐PLGA/DiR, LLCM/DS‐PLGA/DiR, and CRV‐LLCM/DS‐PLGA/DiR). Then, the mice were intravenously injected with different formulations (DiR equivalent to 0.1% of DS‐PLGA). The whole‐body fluorescence distribution patterns at 1, 2, 4, 6, 8, 12, 24, and 48 h were measured using the collected blood samples by RF‐6000 fluorescence spectrophotometer (Shimadzu, Japan) described previously.[15a] DiR blood solution was diluted to 20, 15, 10, 5, 2.5, 1, and 0.5 µg mL−1 to establish the DiR standard curve.
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4

Comparative DiR Biodistribution in db/db Mice

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The db/db mice received ACLT surgery were randomly divided into three groups (DiR‐Vt, DiR‐VPs, and DiR‐MVPs). Then, the mice were intravenously injected with different formulations (DiR equivalent to 0.1% of Vt, the concentration of DiR was ≈0.05 µm). The fluorescence distribution of the right knees was measured at 0, 1, 2, 3, 4, 6, and 9 days after injection by RF‐6000 fluorescence spectrophotometer (Shimadzu, Japan). For the bio‐distribution of MVPs, organ distribution was also measured accordingly.
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5

Characterization of Nanomaterials using Advanced Techniques

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All analytical-grade chemicals used in this study were purchased from Aladdin Chemistry Co., Ltd. (Shanghai, China) and used directly without purification. HRP (≥300 U·mg−1) was purchased from Shanghai Yuanye Bio-Technology Co., Ltd. (Shanghai, China). H2O was purified using a Milli-Q water purification system (Millipore, St. Louis, MO, USA). The UV–Vis and fluorescence spectra of the nanomaterials were collected using a UV-2700 spectrophotometer (Shimadzu Corp., Kyoto, Japan) and an RF-6000 fluorescence spectrophotometer (Shimadzu Corp.), respectively. FTIR spectra were acquired using a VERTEX 80VFT-IR spectrometer (Bruker Daltonik GmbH, Bremen, Germany). The TEM images were obtained using a JEM-2100 microscope (JEOL Ltd., Tokyo, Japan) at 200 kV. The particle sizes were determined using the Dynamic Light Scattering (DLS) method with a Zetasizer Nano ZS 90 (Malvern Panalytical, Malvern, UK).
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6

Monitoring PilB-PilZ and FimX-PilZ Complexes

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The formation of the PilB1-190-PilZW69_5OHW and FimXEAL-PilZW69_5OHW complexes were monitored by changes in the 5-hydroxytryptophan fluorescence emission spectra of PilZW69_5OHW upon addition of different amounts PilB1-190 or FimXEAL. The assay was carried out in buffer containing 50 mM Tris-HCl pH 8,0, 50 mM NaCl, 1 mM MgCl2, 1 mM β-mercaptoethanol and the initial concentrations of PilZW69_5OHW was 1 μM. The samples were equilibrated for 2 min before each measurement. Titration experiments were performed using a RF-6000 fluorescence spectrophotometer (SHIMADZU). The excitation wavelength was 310 nm (bandwidth: 5 nm), and the emission spectra were recorded between 325–445 nm (bandwidth: 5 nm). Dissociation constants were calculated assuming a simple 1:1 bonding model, as previously described [82 (link)] using the SigmaPlot 11 software (Systat Software Inc.).
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7

Intrinsic Fluorescence Profiling of rhFTL

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RF‐6000 fluorescence spectrophotometer (Shimadzu, Japan) was employed to investigate the intrinsic fluorescence emission profile of rhFTL in PBS buffer. The protein sample was diluted to about 0.1 mg/mL and the path length of the cuvette was 1.0 cm. The excitation wavelength was constant at 280 nm, and fluorescence emission signals were recorded from 260 to 450 nm.
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8

Comprehensive Characterization of Photocatalytic Materials

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TD-3500 X-ray diffractometer (XRD) for determination of crystal structure of samples. The measurement conditions were using Cu-Kα as a source (λ = 0.154 nm), a scanning speed of 5 °/min, voltage of 40 kV, and current of 30 mA. The morphology and microstructure of the samples were obtained using field emission scanning electron microscopy (FE-SEM) (JSM-7100F) and transmission electron microscopy (TEM) (JEM-2010) at 200 kV. The composition and content of elements in the sample were determined by energy dispersive X-ray energy spectrometer (EDS) on scanning electron microscope. The UV–Vis diffuse reflectance spectrum was obtained on a Hitachi U-3900 U–Vis spectrophotometer. The instrument uses barium sulfate as reference material. Shimadzu RF-6000 fluorescence spectrophotometer obtained photoluminescence (PL) spectra of samples. The Zeta potential measurement was measured as follows: 5 mg of g-C3N4, Zn3In2S6, and Zn3In2S6/g-C3N4 nanocomposite was added to 10 mL of distilled water and then sonicated for 15 min (40 kHz, 600 W bath type sonicator), respectively. Further, 1 mL of suspension was injected into the cell for the determination of zeta potential (Nano ZS90 Malvern, UK).
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9

Synthesis and Characterization of Cu(GluC)

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Reagents related to the synthesis of Cu[GluC] were commercial reagents without further purification and were provided in the Supplementary Material. The water used in this work was ultrapure water. Sodium, potassium, and copper salts were purchased from Adamas Chemical Reagent Co. Stock solutions of these salts were prepared with ultrapure water, which was also used throughout the study. The synthetic compounds were characterized with a nuclear magnetic resonance (NMR) spectrometer (Bruker, Karlsruhe, Germany) where the residual signals from DMSO-d6 (1H: δ 2.50 ppm) or Chloroform-d (1H: δ 7.26 ppm) were used as internal standards and High-resolution ion mobility liquid chromatography–mass spectrometry (HRLCMS) (LC-30A + TripleTOF5600+, AB SCIEX, USA). The UV-vis spectra were measured with a 1750 UV-visible spectrophotometer (Shimadzu, Japan), and the fluorescence spectra were measured with an RF-6000 fluorescence spectrophotometer (Shimadzu, Kyoto, Japan).
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10

3D Fluorescence Emission Spectra of MP

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The three-fluorescence (3D) fluorescence emission spectra of MP were recorded using an RF-6000 fluorescence spectrophotometer (Shimadzu, Kyoto, Japan) as described by Lv et al. (2022) (link) with modifications. The 3D map was collected with an excitation wavelength of 200–400 nm and an emission wavelength of 200–500 nm, with a 5 and 10 nm slit for excitation and emission, respectively.
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