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6 protocols using anti mouse igg sc 2005

1

Western Blot Analysis Procedure

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Cell lysates (protein of 40 μg) were run on 10% SDS-polyacrylamide gel electrophoresis, subsequently transferred to nitrocellulose membrane. Blots were blocked with 5% BSA and then exposed to the appropriate primary antibody in dilutions (1:1000) suggested from the commercial supplier. Primary antibodies were probed with horseradish peroxidase conjugated goat anti-rabbit-IgG (SC-2004, Santa Cruz, CA, USA) or anti-mouse-IgG (SC-2005, Santa Cruz, CA, USA). Visualization was performed with enhanced chemiluminescence (RPN2209, Amersham, Buckinghamshire, UK). Capturing image was achieved by ChemiDoc image analyzer (Bio-Rad, Hercules, CA, USA).
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2

Antibody Characterization and Validation

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The following primary antibodies were used: rat anti-HA (clone 3F10, Roche), rabbit anti-MyD88 (#3699S), rabbit anti-p105 (#4717), rabbit anti-IκBα (44D4) (#4812S), rabbit anti-p-IκBα (Ser32) (#2859) (all from Cell Signaling), mouse anti-V5 (Thermo Scientific, #R96025), rabbit anti-BANK1 (HPA037002), mouse anti β-actin (clone AC-15) (A5441) (both from Sigma-Aldrich), mouse anti-BANK1 (F-8) (sc-393611), rabbit anti-TRAF6 (H-274) (sc-7221), mouse anti-TRAF6 (D-10) (sc-8409), goat anti-TLR7 (V-20) (sc-16245), goat anti-TLR9 (N-15) (sc-13215), and mouse anti-Myc (9E10) (sc-40) antibodies; as a nonspecific control, the immunoglobulins rabbit IgG (sc-2027) and mouse IgG (sc-2025) (all from Santa Cruz) were used. The HRP-linked secondary antibodies for western blotting were anti-rabbit IgG (sc-2004) (#7074), anti-mouse IgG (sc-2005) (#7076) (both from Santa Cruz and Cell Signaling), anti-goat IgG (sc-2354) or anti-rat IgG (sc-2032) (both from Santa Cruz). The secondary antibodies for IF reactions were Alexa Fluor 555 donkey anti-goat IgG (H + L) (#A-21432), Alexa Fluor 647 goat anti-mouse/rabbit IgG (H + L) (#A-21235; #A-31634) and Alexa Fluor 488 goat anti-rabbit/mouse IgG (H + L) (#A-11034; #A-11001) (all from Thermo Scientific).
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3

Antibody Detection for EMT Markers

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Primary antibodies against AGO2 (ab186733) and Survivin (ab469) were purchased from Abcam Inc. (Cambridge, UK). Antibodies for detecting Snail (#3895) and Vimentin (#5741) were purchased from Cell Signaling Technology, Inc. (Danvers, MA, USA). Primary antibody for GAPDH (sc-25778) and secondary antibodies including anti-rabbit IgG (sc-2004) and anti-mouse IgG (sc-2005) were purchased from Santa Cruz Biotechnology, Inc. (Dallas, TX, USA).
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4

Lung Cancer Cell Line Culturing and Analysis

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The lung cancer cell lines NCI-H460 and NCI-H661 were purchased from the Type Culture Collection of the Chinese Academy of Sciences and were cultured in Dulbecco's modified Eagle's medium (Corning, Inc.) supplemented with 10% fetal bovine serum (Ausbian) in an incubator with 5% CO2 at 37˚C. Erlotinib was supplied by Selleck Chemicals, LY294002 was provided by MedChemExpress and monoclonal antibodies targeting p70S6K(ab32529) or anti-phospho-p70S6K (ab5231) were purchased from Abcam. Anti-GAPDH(sc-32233) and horseradish peroxidase-conjugated anti-rabbit (sc-2004)or anti-mouse IgG(sc-2005) were purchased from Santa Cruz Biotechnology, Inc.
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5

Western Blot Analysis of Melanoma Signaling

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The tissue samples and total cell lysates were extracted with a 1X RIPA buffer and Western blot analysis was performed according to the methods of Lee et al.19 (link) Antibodies to phospho-ERK1/2 (p-ERK) (Cat. no. 9101), ERK (Cat. no. 9102), phospho-AKT (p-AKT) (Cat. no. 9271), AKT (Cat. no. 9272), caspase-3 (Cat. no. 14220), cleaved caspase-3 (Cat. no. 9664), PARP (Cat. no. 9542), cleaved PARP (Cat. no. 9541), Mcl-1 (Cat. no. 5453), Bcl-2 (Cat. no. 2870), Bax (Cat. no. 5023), and PUMA (Cat. no. 4976) were purchased form Cell Signaling Technology, Inc. Antibodies to Dock180 (SC-13163) and Rac1 (SC-217) were purchased from Santa Cruz Biotechnology, Inc. and antibodies to Elmo1 (ab2239) was purchased from Abcam. The secondary antibodies used were HRP conjugated anti-rabbit immunoglobulin (Ig) G (sc-2004), anti-goat IgG (sc-2020), and anti-mouse IgG (sc-2005) were purchased from Santa Cruz Biotechnology, Inc. The human malignant melanoma cells G361 were used as a positive control for antioxidant expression.
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6

Global DNA Methylation Analysis in HEK293 Cells

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Genomic DNA was extracted from two replicates of DMSO or rotenone-treated HEK293 using 1:1:1 phenol: chloroform: isoamyl alcohol (Sigma, St. Louis, MO, United States). Global DNA methylation was first measured by dot blot analysis. Bisulfite-treated DNA (30–60 ng/μL) was denatured at 95°C for 5 min and then cooled at 4°C for 5 min in a conventional thermocycler (MyCycler; Bio-Rad; Hercules, CA, United States). DNA was spotted onto 0.45-micron nitrocellulose paper as 1- or 2-μL drops and dried for 30 min at room temperature. The membrane was UV cross-linked at 3000 Hz and incubated in anti-5methylcytosine (5mC) primary antibody overnight at 4°C (Epigentek 33D3; Farmingdale, NY, United States). The membrane was washed with TBST and incubated with a secondary antibody conjugated to HRP for 1 h at room temperature (Santa-Cruz Biotechnology anti-mouse IgG sc-2005; Dallas, TX, United States). The membrane was washed again with TBST after secondary incubation and visualized with chemiluminescence (ProSignal Femto; Prometheus; Raleigh, NC, United States). We used a serial dilution of 100% 5mC standard (Zymo Research D5012; Irvine, CA, United States) to create a standard ladder (Supplementary Figure 1).
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