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6 protocols using fluorodish plate

1

Imaging Anesthetized Larval Fish

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Larval and juvenile fish were anesthetized with 74 μg/ml tricaine (MS-222, Syndel) in fish facility system water. Fish or dissected fins were transferred immediately to a 35 mm glass bottom FluoroDish plate (World Precision Instruments). Two or three drops of 1% low-melt agarose, stored at 38°C and cooled before application, were placed on the caudal fin. Fins were quickly flattened to the FluoroDish with a single-hair paintbrush before the agarose hardened. The following microscopes were used: Nikon Eclipse Ti-E widefield and Nikon Eclipse Ti2-E with Yokogawa CSU-W1 spinning disk attachments, and Zeiss LSM 880 laser scanning confocal microscope. Confocal image stacks were processed using Imaris software to generate single optical slice digital sections, surface renderings, and 3D reconstructions. Adobe Photoshop was used to adjust levels with identical image acquisition and processing settings for a given experiment. Live fish promptly were euthanized or returned to tanks after imaging.
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2

Imaging Larval and Juvenile Fish Fins

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Larval and juvenile fish were anesthetized with 74 µg/ml tricaine (MS-222, Syndel) in fish facility system water. Fish or dissected fins were transferred immediately to a 35 mm glass bottom FluoroDish plate (World Precision Instruments). Two or three drops of 1% low-melt agarose, stored at 38°C and cooled before application, were placed on the caudal fin. Fins were quickly flattened to the FluoroDish with a single-hair paintbrush before the agarose hardened.
The following microscopes were used: Nikon Eclipse Ti-E widefield and Nikon Eclipse Ti2-E with Yokogawa CSU-W1 spinning disk attachments, and Zeiss LSM 880 laser scanning confocal microscope. Confocal image stacks were processed using Imaris software to generate single optical slice digital sections, surface renderings, and 3D reconstructions. Adobe Photoshop was used to adjust levels with identical image acquisition and processing settings for a given experiment. Live fish promptly were euthanized or returned to tanks after imaging.
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3

Cerebral Cortex Neuron Cultures from Cerkl Mutant Mice

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Hippocampi were carefully dissected from WT and CerklKD/KO mouse brains (E16 embryos) in PBS containing 3% glucose. Then, the samples were treated with trypsin (Invitrogen, Carlsbad, CA, USA) and DNAse (Roche Diagnostics, Indianapolis, IN, USA) and physically dissociated into single neurons. Neurons were plated on glass coverslips or 35-mm Fluorodish plates (World Precision Instruments Inc), coated with 0.5 mg/mL poly-L-lysine (Sigma-Aldrich, St. Louis, MO, USA) and incubated in neurobasal medium (Gibco, Grand Island, NY, USA) containing 2 mM glutamax, 120/mL penicillin, 200/mL streptomycin, and B27 supplement (Invitrogen, Waltham, MA, USA). Cells were maintained at 37 °C in the presence of 5% CO2 and were cultured for between 5 and 6 days. Hippocampal cultures at 4 DIV were transfected with Lipofectamine 2000 (Life Technologies, Carlsbad, CA, USA) according to the manufacturer’s guidelines.
In immunocytochemistry experiments on fixed cells, 1 μM MitoTracker™ Orange CMTMRos (Thermo Fisher Scientific, Rockford, IL, USA) was added to the neurons to stain mitochondria and incubated for 20 min at 37 °C before fixation.
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4

Biofilm Generation with EP Concentrations

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For biofilm generation, samples were prepared in FluoroDish plates (World Precision Instrument Inc., China) that contained 3 mL of sterile tripticase soy broth supplied with sucrose, 1%. The plates were prepared with 10 μL of bacterial inoculum (5 × 105 UFC·mL−1) for incubation at 5% of atmosphere CO2, at 37°C for 48 hours. Biofilm was generated in a liquid medium, and different concentrations of EP were added (0.1 to 1.96 μg·mL−1).
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5

Imaging Calcium Dynamics in Cells

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Cells were planted on fluorodish plates (35 mm, World Precision Instruments, Sarasota, FL, USA) for experiments. After OGD/R for 24 h, cells were washed with HBSS (calcium-free) and loaded with 5 μM Fluo-3 AM (Beyotime Institute of Biotechnology) in HBSS (calcium-free) for 60 min at 37 °C. The cells were then washed with HBSS (calcium-free) and incubated in HBSS (calcium-free) for an additional 30 min. Images were captured by an inverted confocal microscope (Live5; Carl Zeiss, Inc., Tokyo, Japan) to detect the fluorescence intensity of cells, which represented the calcium concentration in the cytoplasm. It took 90 seconds to determine basal fluorescence intensity, then 0.2 μM Tg or 2 μM of ATP were added directly to the cell solution to trigger ER Ca2+ depletion49 or IP3R- and IP3-induced Ca2+ release (IICR)50 (link); cells were then continuously observed for 6 min. Cells were excited by a 488-nm laser, and images were acquired at 5 s intervals in time-lapse mode and subsequently analyzed using ImageJ software (National Institutes of Health, Bethesda, Maryland, USA). These data were quantified as the area under the curve (AUC) for all peaks.
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6

Cloning and Transfection of PrecIL-1α-GFP

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PrecIL-1α fused to GFP was cloned into the pEGFP-N1 vector (Clontech) as was previously described by Cohen et al.5 (link). The substitute mimicry mutations of IL-1α-K82 was performed using the site-directed mutagenesis PCR reaction with the forward primer 5′-phospho-TCAAGCAACGGGCAGATTCTGAAGA or 5′-phospho-TCAAGCAACGGGCGGATTCTGAAGA together with reverse primer 5′-phospho-CGTTGCTGATACTGTCACCCGG with the precIL-1α-GFP encoding vector as a template and the Phusion DNA polymerase enzyme (New England Biolabs), according to the manufacturer’s protocol. For transient transfections, 5 × 104 B16 mouse melanoma cells were cultured in 35 mm Fluorodish plates (World Precision Instruments) for 24 h and then transfected with the various IL-1α plasmids using the JetPEI transfection reagent (Polyplus Transfection). 16 h after transfection, the GFP signal was visualized with the Olympus Fluoview FV1000 confocal microscope (Olympus) using 405 nm and 488 nm laser lines. Nuclear counter-staining of the transfected cells was performed with Hoechst 33342 (Fluka).
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