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PaCa-2 is a cell line derived from a human pancreatic adenocarcinoma. It is widely used in research as a model for studying pancreatic cancer.

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35 protocols using paca 2

1

Culturing Pancreatic Cancer Cell Lines

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The human pancreatic cancer cell lines Mia PaCa-2, BxPC-3, Panc-1, human pancreatic cells UACC-462 and hTERT-HPNE were purchased from ATCC (Manassas, VA, USA) and cultured based on the ATCC established guidelines. Human KP3 was obtained from JCRB cell bank (Tokyo, Japan) while murine pancreatic adenocarcinoma cell line Panc-2 was obtained from Frederick National Laboratory for Cancer Research (Frederick, MD, USA). All pancreatic cancer cells were either cultured in DMEM or RPMI1640 medium supplemented with 10% of fetal bovine serum (FBS) and 1% of penicillin/streptomycin. UACC-462 was cultured in Leibovitz’s L-15 medium supplemented with 5% of FBS. hTERT-HPNE cells were cultured with a mixture of 75% DMEM (no glucose; Thermo Fisher Scientific, Waltham, MA, USA) and 25% Medium M3 Base (InCell, Frisco, TX, USA) supplemented with 5% FBS, 10 ng/mL human recombinant epidermal growth factor, 1 g/L glucose, and 750 ng/mL puromycin. All cells were maintained in 37°C humidified incubator supplemented with 5% CO2.
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2

PC Cell Line Cultivation Protocol

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Two human PC cell lines MIA PaCa-2 and Panc-1 were received from ATCC (Rockville, MD). To culture and maintain the cells, Dulbecco’s modified Eagle’s medium (DMEM) with 10% fetal bovine serum (FBS) was used. Cells were cultured in a humidifier at ambient temperature of 37 °C with 5% CO2 and 95% air.
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3

Culturing Human Pancreatic Cancer Cell Lines

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The human pancreatic cancer cell line SUIT-2 was obtained from the Japanese Collection of Research Bioresources Cell Bank (JCRB1094, RRID: CVCL_3172) and cultured in minimum essential medium (Gibco, 31095-029) supplemented with 10% fetal bovine serum (Gibco, A3160801). Another human pancreatic cell line MIA PaCa-2 was obtained from ATCC (CRM-CRL-1420, RRID: CVCL_0428) and cultured in Dulbecco’s modified Eagle’s medium (Gibco, 31966-021) supplemented with 10% fetal bovine serum and 2.5% horse serum (Gibco, 16050-130). Both cell lines were incubated in a humidified atmosphere with 5% CO2 at 37 °C.
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4

Cell Line Culture Protocol

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The human AML cell-line, MOLM-14, was a gift from Dr. Mark Levis from Johns Hopkins University. The human pancreatic MIA Pa-Ca-2, human breast MDA-MB-231 and Non-small cell lung A549 cell lines were purchased from ATCC (ATCC, Manassas, VA). Cell lines were grown in 37 °C with 5% CO2 atmosphere with RPMI 1640 (Life technologies, Carlsbad, CA) or DMEM (Cellgro Mediatech; Manassas, VA) supplemented with heat-inactivated 10% (V/V) fetal bovine serum (Hyclone; Fisher Scientific, Pittsburgh, PA) and 1% glutamine (Cellgro Mediatech). Cell lines were grown and maintained according to ATCC recommendations.
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5

Validation of HyCHEED using Pancreatic Carcinoma Cell Line

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In view of the relevance of the clinical application of IRE in pancreatic cancers [29 (link),30 (link)], a pancreatic carcinoma cell line was selected for the validation of HyCHEED. The human pancreatic carcinoma Mia PaCa-2 (ATCC, Manassas, VA, USA) was grown in high glucose in Dulbecco’s Modified Eagle Medium (Life Technologies, Carlsbad, CA, USA) that was supplemented with 10% heat-inactivated fetal bovine serum (Gibco, Rockville, MD, USA) and 2 mmol·L−1 glutamine (Gibco, Rockville, MD, USA). The cells were cultured in a 37 °C incubator with humidified air supplemented with 5% CO2. After reaching a confluence of 90%, the cells were harvested via trypsinization (5 time diluted 0.5% Trypsin-EDTA, Gibco, Rockville, MD, USA) and suspended in the culture medium at a concentration of 0.98 × 106–1.40 × 106 cells·mL−1. The cell concentrations were determined using Trypan blue stain assay and an automated bright-field cell counter (LUNATM Automated Cell Counter, Aligned Genetics, Inc., Anyang-si, Korea). The protocol to determine the cell concentrations is described in Section 2.6.2. Please note that for the experiments in this study the culture medium was used in the cell suspension during the treatments. In Section 2.6 methods are discussed for the evaluation of the cells treated by HyCHEED.
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6

Culturing Pancreatic Cell Lines

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The normal human pancreatic cell line HPDE6c7 (CL0317, Hunan Fenghui Biotechnology Co., Ltd., Changsha, China), PCa cell lines PANC-1 (CRL-1469), CFPAC-1 (CRL-1918), BxPC-3 (CRL-1687), ASPC-1 (CRL-1682), PACA-2 (CRM-CRL-1420), SW1990 (CRL-2172), and HEK293T (CRL-11268) from ATCC (Manassas, VA) were cultured in medium supplemented with 10% FBS and 1% penicillin/streptomycin with 5% CO2 at 37°C. McCoy's 5a (Sigma-Aldrich, St Louis MO) medium was used for the following: HPDE6c7 cell culture; IMDM (Gibco) for CFPAC-1 cell culture; DMEM for PANC-1, PACA-2, and HEK293T cells; RPMI-1640 medium for BxPC-3 and ASPC-1 cells; Leibovitz's L-15 (Gibco) medium for SW1990 cells.
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7

Culturing Pancreatic Cancer Cell Lines

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The pancreatic cancer cell lines AsPC-1 (ECACC nr. 96020930), BxPC-3 (ECACC nr. 93120816), CFPAC-1 (ATCC nr. CRL-1918), PaCa-2 (ATCC nr. CRL-1420), Capan-2 (ATCC nr. HTB-80), Capan-1(ATCC nr. HTB-79) and HPAF-II (ATCC nr. CRL-1997) (S1 Table) were obtained from European Collection of Authenticated Cell Cultures (ECACC, Porton Down, Salisbury, UK) and American Type Culture Collection (ATCC, Rockville, MD, USA). The pancreatic cell line PaCa-44 was a kind gift from Dr. Matthias Löhr (Karolinska University Hospital Huddinge, Stockholm, Sweden). Capan-1, Capan-2, PaCa-44 and BxPC-3 cells were cultured in DMEM/F12 medium (Gibco, Life Technologies, Karlsruhe, Germany), PaCa-2 cells were cultured in DMEM (high glucose) medium (Gibco) and AsPC-1, CFPAC-1 and HPAF-II cells were cultured in RPMI medium (Gibco) containing 10% FCS (Gibco), 2% glutamine (Biochrom KG, Berlin, Germany) and 100 ug/ml penicillin/ streptomycin (Biochrom KG) at 37°C in a humidified incubator with 5% CO2.
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8

Pancreatic Cancer Cell Line Characterization

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The human pancreatic cancer cell lines AsPC-1, BxPC-3, PANC-1, PaCa-2, and SW1990, and the human pancreatic ductal epithelial cell line HPDE6-C7 were from ATCC (Rockville, MD, United States). The cells were cultured in RPMI-1640 or DMEM (Gibco, Waltham, MA, United States) containing 10% fetal bovine serum (FBS). Overexpression plasmid containing C9orf139 (sh-C9orf139), plasmids for knockdown (si-C9orf139-#1, si-C9orf139-#2, and si-C9orf139-#3), and Sox12 expression plasmid (pcDNA3.1-Sox12) were constructed by Shanghai GenePharma Co., Ltd. Sox12 shRNA, Sox12 siRNA, control siRNA, miR-663a mimic, miR-NC, miR-663a inhibitor, and control inhibitor were obtained from RiboBio (Guangzhou, China). Cell transfection was performed using Lipofectamine 2000 (Invitrogen, Carlsbad, CA, United States) according to the manufacturer’s instructions.
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9

Evaluating Cytotoxic Effects of Natural Compounds

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TPL and CL were purchased from Chengdu Biopurify Phytochemicals Ltd. (Chengdu, China). Cocoons were kindly supplied by Tongxiang mulberry silk base of Zhejiang Province (Tongxiang, China). Dialysis membrane with a cut off of 7,000 Da (MWCO) was obtained from Viskase Companies, Inc. (Chicago, USA). Hoechst 33342 and 3-[4, 5-dimethylthiazol-2-yl]-2, 5-diphenyltetrazolium bromide (MTT) were obtained from Sigma-Aldrich (St. Louis, MO, USA). RITC and Annexin V-FITC apoptosis detection kits were supplied by Sigma Chemicals (St. Louis, MO, USA). HPLC grade acetonitrile and methanol were obtained from BDH Chemicals (Gibbstown, NJ, USA). Other chemicals used in this study were all analytical pure grade and used as received. Ethanol, acetone and other chemicals used in this study were acquired from VWR international (Darmstadt, Germany) unless specified otherwise.
Dulbecco’s modified Eagle’s medium (DMEM) and fetal bovine serum (FBS) were purchased from Gibco BRL (Carlsbad, CA, USA). Penicillin–streptomycin, 0.25% trypsin-EDTA and non-essential amino acids were obtained from Invitrogen Co. (Carlsbad, CA, USA). Human pancreatic cancer cells MIA PaCa-2 and Panc-1 cells were generous gifts from Dr. Prabhu’s lab, originally obtained from American Type Culture Collection (Rockville, MD, USA).
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10

Characterization of ATDC in Pancreatic Cancer

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Panc1 Mia PaCa2, and BxPC3 pancreatic ductal adenocarcinoma and the human embryonic kidney (HEK293) cell lines were purchased from American Type Culture Collection and used within six months of attainment. No additional authentication was performed on the cell lines following receipt. The human keratinocyte HaCat cell line was a gift from James Elder (University of Michigan). The ATM inhibitor KU55933 was provided by Graeme Smith (Cambridge University) and the Chk1/2 inhibitor AZD7762 by Meredith Morgan (University of Michigan). The MK2 inhibitor was purchased from EMD (Darmstadt, Germany) and the p38 inhibitor SB203580 from Cell Signaling Technology (Beverly, MA), the complementary DNA of human ATDC (provided by John Murnane, University of California, San Franscisco). ATDC mutants were generated using the QuikChange® II XL Site-Directed Mutagenesis Kit (Stratagene, La Jolla, CA). HEK293 cells with stable expression of ATDC, and Panc1 and BxPC3 cells with ATDC knockdown using shRNA have been described (18 (link)).
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