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Gapdh

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GAPDH is a key enzyme involved in glycolysis, the metabolic pathway that converts glucose into energy. It catalyzes the conversion of glyceraldehyde 3-phosphate to 1,3-bisphosphoglycerate, an important step in the oxidation of glucose. GAPDH is commonly used as a reference gene or loading control in various molecular biology techniques, such as Western blotting and real-time PCR, due to its consistent expression across different cell types and experimental conditions.

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2 protocols using gapdh

1

Quantifying Muscle Protein Signaling

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The gastrocnemius muscle samples were homogenised in buffer containing 20 mM Tris, 1 mM DTT, 2 mM ATP, and 5 mM MgCl2, centrifuged at 12,000 g, and total protein content was assessed using the Lowry method [32 (link)]. Muscle samples (60 µg of protein) were analysed using SDS-polyacrylamide gel electrophoresis (10% or 12%) and transferred to a 0.45-µm pore size nitrocellulose membrane, which was blocked with skim milk (5%) for 1 h. Proteins were probed with primary antibodies GAPDH (SC47724) (Santa Cruz Biotechnology, Santa Cruz, CA, USA); 20S (PW8195), 19S (PW9265), and 11S (PW8185) (Enzo Life Sciences, Farmingdale, NY, USA); PI3K (4292), phosphor-PI3K (4228), mTOR (2972), phospho-mTOR (2971), p70S6K (9202), phospho-p70 S6KThr421/Ser424 (9204), 4E-BP1 (9452), phospho-4E-BP1Thr70 (9455), and eIF4G (2498) (Cell Signalling, Danvers, MA USA); and secondary antibodies goat anti-rabbit (7074) and horse anti-mouse (7076) (Cell Signalling). The Western blot band images were captured using the Alliance 2.7 (UVITEC, Cambridge, UK) and quantified using UVIband-1D (UVITEC), and protein expression was normalised using GAPDH as a loading control.
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2

Protein Expression Analysis of Cellular Lysates

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HT29 cell, platelet, and mEV pellets were lysed in lysis buffer containing 1% Triton X-100-PBS, 1 mM of phenylmethylsulfonyl fluoride (PMSF) (Sigma-Aldrich) and protease inhibitors (Thermo Scientific). Then cell lysates were put on ice for 30 min, and cell debris was removed by centrifugation (10,000 g, 5 min at 4°C). The Bradford assay (Bio-Rad, Milan, Italy) was used to assess protein concentration. Lysate samples were loaded onto 12% Sodium Dodecyl Sulfate–PolyAcrylamide Gel Electrophoresis (SDS-PAGE) and then transferred to polyvinylidene difluoride PVDF membranes (Bio-Rad). Finally, they were blocked with 5% nonfat milk in Tris-buffered saline-0.1% Tween-20 (TBS-Tween-20). In different experimental conditions, protein expression was detected using specific primary antibodies incubated overnight at 4°C: platelet 12-LOX (12-LOX, Abcam, dilution 1:1,000 in T-TBS-5% Milk), GPR31 (Sigma-Aldrich, dilution 1:1,000 in T-TBS-5% Milk), and GAPDH (Santa Cruz Biotechnology, dilution 1:1,000 in TBS-Tween 20) or β-actin (Santa Cruz Biotechnology, dilution 1:1,000 in TBS-Tween 20) were used as a loading control. Then, the membranes were washed in TBS-Tween 20 and incubated with the secondary antibodies. Quantification of optical density (OD) of different specific bands was calculated using Alliance 1 D software (UVITEC, Cambridge, UK) and normalized to the OD of GAPDH or β-actin.
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