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7 protocols using goat anti mouse fitc

1

Bovine CD1 Protein Expression and Antibody Analysis

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BoMac cells were transiently transfected with cloned full length wild type CD1b1, CD1b3, and CD1b5 in pcDNA3.1 using Fugene-6 reagent (Roche) according to the manufacturer’s protocol, and analysed 48 hours after transfection. K562 cells transfected with bovine CD1d and human CD1a, and C1R cells transfected with bovine CD1b and CD1a were described previously [3 (link), 12 (link)]. The anti bovine CD1 antibodies CC20 (IgG2a), CC43 (IgG2b), and CC122 (IgG1) were kindly provided by Dr. C. J. Howard, Compton, UK; 20.27 SBU-T6 (IgG1) was obtained from the European Collection of Cell Cultures; CC14 (IgG1) and CC118 (IgG1) were kindly provided by Dr. J. C. Hope, Compton, UK; BCD1b.3 (IgG1) was provided by Dr. D. B. Moody, Brigham and Women’s Hospital, Boston, goat anti mouse FITC and goat anti mouse PE were obtained from Becton Dickinson. PE-labelled anti bovine Ig light chain antibody IL-A59 was used as B cell marker (Serotec).
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2

Surface Ceramide Profiling by Flow Cytometry

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Cells were harvested gently from non-adherent dishes, washed with PBS (w/o Ca2+; Mg2+) and resuspended in PBS (w/o Ca2+; Mg2+)/0.5% BSA to yield 5x106 cells/mL. Flow-cytometric analysis of surface exposed ceramide of 5x105 cells was performed. Cells were incubated for 15 minutes on ice with saturating concentrations of the antibodies against ceramide (MID15B4, Alexis), CDw17 (G035-FITC, Becton-Dickinson), CD65s (VIM2-FITC, Caltag) and CD77 (38–13, Immunotech). Monoclonal antibodies used for detection were directly fluorochrome-conjugated or indirectly labeled by subsequent incubation with fluorochrome-conjugated secondary reagents (ceramide: goat anti mouse-FITC, Becton-Dickinson; CD77: goat anti rat-PE, Dianova) after two washing steps with PBS containing 0.5% BSA. GM1 was stained using Alexa Fluor 488 labeled cholera toxin subunit B (Molecular Probes).
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Exosome Characterization by Flow Cytometry

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Purified exosomes (200 μg) were incubated with 10 μL of 4-μm-diameter aldehyde/sulfate latex beads (Invitrogen, Eugene, OR) in PBS for 1 h at room temperature with gentle agitation. After washing with PBS, samples were blocked with 200 mM glycine for 30 min and washed again. Beads were incubated with the following exosome-associated antibodies for 30 min: anti–CD63 (Millipore, Billerica, MA, USA), anti-CD9 (BD Biosciences, San Jose, CA, USA), anti-HLA-A,B,C (BioLegend, San Diego, CA, USA), anti-TSG101 (Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-HSP70 (Novus Biologicals, Littleton, CO, USA), anti-lysosomal membrane glycoproteins CD107a (LAMP-1) (Miltenyi Biotec, Auburn, CA, USA), anti-MICA/B (eBioscience, Grand Island, NY, USA), anti-CD81 (ProSci, Fort Collins, CO, USA), anti-TGF-β (Peprotech, Rocky Hill, NJ, USA), and anti-FasL (Boster, Pleasanton, CA, USA). Staining with secondary antibodies for 30 min followed, using goat anti-rabbit Alexa Fluor 488 (Invitrogen, Eugene, OR, USA) and goat anti-mouse FITC (Becton Dickinson, Franklin Lakes, NJ, USA). A “bead-only” control as well as isotype-matched antibody controls were also prepared. Samples were washed twice, fixed with 1% paraformaldehyde and analyzed using a MACSQuant Analyzer and FlowJo software. Single beads were gated for fluorescence analysis.
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4

Cytosine Deaminase and Carboxylesterase Assays

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(1) Cytosine Deaminase. One day after transfection/transduction, NSCs were fixed and permeabilized and incubated 40 min with Anti-CD (BD Pharmingen, 557,862) then 20 min with goat anti-mouse FITC (BD Pharmingen, 55598) before flow cytometric analysis. Histograms were generated using FlowJo (Tree Star, Ashland, OR, USA).
(2) Carboxylesterase. One day after transduction, CE enzyme activity was measured by conversion of o-nitrophenyl acetate substrate to o-nitrophenol and determined by spectrophotometry at 420 nm as previously described [36 (link)].
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5

Intestinal Antigen Uptake Mechanisms

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Six to ten week-old C57BL/6 mice (Jackson laboratories) were used for the studies. Carboxylate-modified fluorescent polystyrene NPs, ranging in size from 20 nm to 2 µm (Invitrogen), and E.coli BioParticles® (Invitrogen) were used as model particulate antigens. Chicken Ova (45 kDa, Sigma), Ova-fluorescein conjugate (Invitrogen), dextran-fluorescein, lysine-fixable dextran-biotin (40 kDa, Invitrogen), and LPS-Alexa Fluor® 488 (3 kDa, Invitrogen) were used as model soluble antigens. Biotinylated rabbit anti-Ova antibodies (Thermo Scientific) and streptavidin-FITC (Biolegend) were used to detect Ova and Ova conjugated to NPs (NP-Ova). Anti-CD11c (eBioscience), Cy-18 (Biolegend) and Lyve-1 (eBioscience) antibodies were used to label LP DCs, goblet cells, and lymphatic ducts respectively. A combination of monoclonal mouse anti-E-cadherin (BD Biosciences) primary antibody and goat anti-mouse-FITC (BD Biosciences) secondary antibody was used to label the IECs. All antibodies were used at a 1∶100 dilution in appropriate blocking buffer. To highlight the tissue architecture in cryosections, actin-binding Phalloidin-Alexa 350 (Invitrogen) was used. DAPI (4′,6-Diamidino-2-Phenylindole, Dilactate, Invitrogen) was used for in vivo labeling of the IEC nuclei. Genistein and chlorpromazine (CPZ) (Sigma) were used for in vivo inhibition of NP uptake at 200–1000 µM and 10–100 µg/ml respectively.
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6

Immunohistochemical Analysis of Autophagy

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Paraffin-embedded tumor samples were first de-paraffinized by treatment with xylene and then rehydrated by passage through a graded series of ethanol. The indirect immunostainings of tissue sections were performed at 4 °C overnight using the following primary antibodies for the autophagy-related proteins: anti-ATG5 (1:100, 0262-100, 7C6, nanoTools, Taningen, Germany), anti-Beclin 1 (1:200, NB110-87318, NanoTools, Taningen, Germany), LC3 (1:100, 0231–100, 5F10, nanoTools, Taningen, Germany), anti-Caspase 3, active (1:100, cleaved, AB3623, Merck, Switzerland), and anti-Ki-67 (1:100, AB9260, Merck, Switzerland). The slides were incubated with the secondary antibodies goat anti-mouse FITC (1:500, BD Biosciences Allschwil, Switzerland), goat anti-rabbit FITC (1:500, Vector Laboratories, Liestal, Switzerland) or Cy3-conjugated goat anti-mouse antibody (1:1000, Sigma Aldrich, Sigma Aldrich, Buchs, Switzerland) at room temperature for 1 h. Subsequently, they were counter-stained with DAPI (4′,6-diamidino-2-phenylindole, 1:200, Sigma Aldrich, Buchs, Switzerland). For negative controls, the primary antibody was omitted. Images were acquired with a Leica fluorescence microscope (CTR 6000).
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7

Immunohistochemical Analysis of ADSC

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ADSCs were cultured on Lab-Tek chamber slides (Thermo Scientific, Nunc, Switzerland) in growth medium or inductive medium for the required time. The indirect immunostainings were performed at 4°C overnight using the following primary antibodies for the ADSCs: CD44, CD29, Stro-1, stage-specific embryonic antigen-1 (SSEA-1) and CD34. The neurogenic differentiation was confirmed using mouse anti-neurofilament 68 (Sigma, Buchs, Switzerland) and mouse anti-beta tubulin Isotyope III (Sigma, Buchs, Switzerland) antibodies.
The differentiation was confirmed with SMC markers as mentioned above. The slides were incubated with the secondary antibodies: goat anti-mouse FITC (BD Biosciences, Allschwil, Switzerland), goat anti-rabbit FITC (Vector lab, Servion, Switzerland) or Cy3-conjugated goat anti-mouse antibody (Sigma) at room temperature for 1 h. The slides were counter stained with DAPI (4',6-diamidino-2-phenylindole, Sigma). The slides were analyzed with a Leica fluorescence microscope (CTR 6000). Negative control consisted of secondary antibody only and primary antibody was omitted. For negative controls only secondary antibodies were added.
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