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4 protocols using dy479 05

1

Cytokine profiling in SmoA1 tumors

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Mouse Cytokine array panel A (ARY006, R&D systems) was used to measure cytokine levels in various cells and tissues using the manufacturer’s provided protocol. Tumour tissue was extracted from NeuroD2:SmoA1;Atoh1:GFP mice and dissociated using papain digestion. Approximately 20 million GFP+ cells were sorted in PBS, centrifuged at 350 × g for 5 min, and lysed in the provided buffer. CCL2 cytokine content in tissue lysates was performed using R&D systems kit DY479-05 according to the manufacturer’s instructions. TUNEL apoptosis assays were performed on paraffin-embedded tumour tissue sections using in situ cell death detection kits (Roche Diagnostics, #11684795910).
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2

Hepatic Biomarker Profiling in Mice

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Hepatic levels of TG (Sigma, MAK266), cholesterol (Sigma, MAK043), glycogen (Biovision, K646-100), total BA levels (Diazyme, DZ042A), serum NEFA (Sigma, MAK044), serum ALT (Sigma, MAK052), and serum AST (Sigma, MAK055) were determined according to the manufacturer’s instructions. Mouse liver IL-1β (R&D Systems, MLB00C) and CCL2 (R&D Systems, DY479-05) were detected by commercially available ELISA kit.
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3

Metabolic and Inflammatory Profiling

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Hepatic levels of TG (Sigma, MAK266), cholesterol (Sigma, MAK043), glycogen (Biovision, K646–100), total BA levels (Diazyme, DZ042A), serum NEFA (Sigma, MAK044), serum ALT (Sigma, MAK052) and serum AST (Sigma, MAK055) were determined according to the manufacturer’s instructions. Mouse liver IL-1β (R&D systems, MLB00C) and CCL2 (R&D systems, DY479–05) were detected by commercially available ELISA kit.
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4

Dissection and Culture of DRG Neurons

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DRGs from miR-21–cKO mice and their littermate controls were collected and placed into Ham’s F-12 Nutrient Mixture (Gibco). DRGs were then dissociated using 3 mg/mL Dispase (Roche), 0.1% collagenase (Sigma-Aldrich), and 200 U/mL DNase I (Sigma-Aldrich) in F-12 medium (Gibco). Thereafter, DRGs were triturated, and cell suspensions centrifuged at 300g for 6 minutes. Pellets were resuspended in fresh DRG medium and plated on glass coverslips precoated with poly-L-ornithine (100 μg/mL; Sigma-Aldrich) and laminin (40 μg/mL; Roche). Cultures (10,000 cells/well) were incubated at 37°C for 24 hours, and then stimulated with vehicle or capsaicin (1 μM) for 3 hours. Culture media were removed, and CCL2 was measured using ELISA (R&D Systems, DY479-05) in DRG neuronal culture media, according to the manufacturer’s instructions.
Transmigration assay was performed using cell culture inserts (Transwell plate, Costar) with 8-μm porous polycarbonate filters. DRG neurons (10,000) were cultured in 300 μL F-12/10% FBS in the lower compartment for 24 hours, and then 40,000 WT BMDMs treated with vehicle or CCR2 antagonist (1 μM; Merck) were added to the upper filter. DRG neurons were then stimulated with capsaicin (1 μM) for 3 hours.
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