The largest database of trusted experimental protocols

31 protocols using ab81298

1

Protein Expression Analysis in Transfected Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
The transfected cells and tumor tissues were lysed in RIPA lysis buffer (CWBio) on ice for 30 min and the mixture was centrifuged for 15 min (4°C, 14,000 × g) to obtain the supernatant. Following quantitative analysis using a BCA kit (Beyotime Institute of Biotechnology), the proteins were separated on 10% sodium dodecyl sulfate polyacrylamide gels by electrophoresis, transferred to polyvinylidene difluoride membranes and incubated with 5% non-fat milk for 2 h at room temperature. Subsequently, the membranes were incubated with antibodies against matrix metalloproteinase (MMP)2 (ab92536; dilution, 1:1,000), MMP9 (ab76003; dilution, 1:1,000), Ki67 (ab92742; dilution, 1:5,000), survivin (ab208938; dilution, 1:1,000), β-catenin (ab6302; dilution, 1:4,000), c-MYC (ab32072; dilution, 1:1,000), cyclin D1 (ab16663; dilution, 1:200), phosphorylated (p)-FAK (ab81298; dilution, 1:1,000), p-AKT (ab81298; dilution, 1:1,000) and GAPDH (ab9485; 1:1,000) (all from Abcam) at 4°C overnight. The following day, the membranes were incubated with a horseradish peroxidase-labeled secondary antibody (#7074; 1:1,000; Cell Signaling Technology, Inc.) at room temperature for 1 h and visualized using ECL reagents (Research-bio). Relative protein expression was quantified using Image-Pro Plus software (version 6.0; Media Cybernetics, Inc.).
+ Open protocol
+ Expand
2

Immunoblotting Analysis of Focal Adhesion Kinase Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
The reagents used were as follows: rabbit monoclonal antibodies against p-FAK (Tyr397) (1:1000, ab81298, Abcam), flag(1:1000, 14793 S, Cell Signaling Technology), myc (1:1000, 2278t, Cell Signaling Technology), SRF (1:500, #5147, Cell Signaling Technology), N-Cadherin (1:1000, #13116, Cell Signaling Technology), NgR3 (1:1000, NBP1-92359, Novus); rabbit polyclonal antibodies against FAK (1:1000, #3285 S, Cell Signaling Technology dilution); p-SRF (Ser103) (1:500, #4261, Cell Signaling Technology); Alexa Fluor® 594 (or 488)-conjugated goat-anti-mouse (or rabbit) (1:2000, ThermoFisher); mouse monoclonal antibodies against GAPDH (1:2000, KC-5G4, Kangcheng Biotech). Nuclear dye against 40–60-diamidino-2-phenylindole (DAPI; 1:2000, Molecular Probes).
+ Open protocol
+ Expand
3

Mechanosensitive Protein Expression in mPFBs

Check if the same lab product or an alternative is used in the 5 most similar protocols
mPFBs were cultured on plates of different elastic modulus (8 kPa, 0.2 kPa) coated with 100 µg/ml collagen type I (PureCol, Advanced BioMatrix, Carlsbad, CA) in DPBS for 24 h. Cell lysates were harvested with RIPA buffer (Sigma Aldrich) containing protease and phosphatase inhibitor cocktails. Protein concentration was determined by Pierce® BCA Protein assay kit (Pierce; Waltham, MA). 12 µg proteins of each sample were separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to nitrocellulose membranes. Membranes were washed with Tris-buffered saline containing 0.05% Tween-20 (TBS-T) and blocked with 5% dried milk in TBS-T or 5% bovine serum albumin (BSA) in TBS-T. Primary antibodies for fibronectin (ab1954, 1:2000, Millipore), α-SMA (A5228, 1:2000, Sigma Aldrich), pFAK Y397 (ab81298, 1:1000, Abcam), FAK (ab40794, 1:1000, Abcam), Vinculin (MAB3574, 1:1000, Millipore), β1-integrin (SAB5600100, 1:1000, Sigma-Aldrich), GAPDH (MAB374, 1:1000, Millipore) were used to incubate the membranes for 12 h. Detection was with appropriate peroxidase-conjugated secondary antibodies (1:2500, Jackson ImmunoResearch; West Grove, PA), which were developed with Clarity Western ECL substrate (Bio-Rad; Hercules, CA). Densitometry analysis was performed using Image Lab Software (Bio-Rad).
+ Open protocol
+ Expand
4

Western Blot Analysis of Signaling Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell lysates were separated by SDS-PAGE, followed by wet transfer onto 0.45 µm PVDF membranes, which were then blocked with 5% BSA in PBST solution for 30 min. Specific primary antibody incubation was conducted overnight at 4 °C. The antibodies used were as follows: anti-phospho-Y397-Fak (ab81298, Abcam, USA), anti-FAK (ab131435, Abcam, USA), anti-Tyr416-phosphor-c-Src (#2010s, CST), anti-c-Src (#2108s, CST), anti-Ser473-phospho-Akt (#4060s, CST), anti-Akt (#9272, CST, Danvers, MA), anti-FASN (#14979-1-AP, Proteintech, Rosemont, USA), anti-β-actin (#sc-81178, Santa Cruz, USA). Secondary antibody was incubated for 1 h at RT. Immunodetection was accomplished using enhanced chemiluminescence. The band intensity was determined with ImageJ software. All the original western blot pictures were provided in the “Supplemental Material original western blots”.
+ Open protocol
+ Expand
5

Western Blot Analysis of Epithelial-Mesenchymal Transition Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were treated with radioimmunoprecipitation assay buffer (RIPA, Beyotime, China) supplemented with 1% protease and phosphatase inhibitors (CWBIO, China). Equal amounts of protein were electrophoresed and transferred onto polyvinylidene fluoride (PVDF) membranes, which were blocked by 5% nonfat milk in TBST buffer for one hour and then incubated with primary antibodies against the following proteins: DHX9 (ab26271, Abcam, UK, RRID:AB_777725), GAPDH (AC002, ABclonal, China, RRID:AB_2736879), STEAP4 (ab63967, Abcam, UK, RRID:AB_1143135), FAK (ab40794, Abcam, UK, RRID:AB_ 732,300), pFAK (phospho Y397) (ab81298, Abcam, UK, RRID:AB_1640500), ZO-1 (#8193, CST, US, RRID:AB_10898025), E-Cadherin (#3195, CST, US, RRID:AB_2291471), Vimentin (#5741, CST, US, RRID:AB_10695459), N-Cadherin (#13116, CST, US, RRID:AB_2687616), ZEB1 (#3396, CST, US, RRID:AB_1904164), Slug (#9585, CST, US, RRID:AB_2239535), and β-Catenin (#9562, CST, US, RRID:AB_331149). The next day, the membranes were washed with TBST buffer and incubated with HRP-conjugated secondary antibodies. Signal intensities were measured by Immobilon ECL substrate (Millipore, Germany), and images were acquired using an OPTIMAX X-ray Film Processor (Protec, Germany).
+ Open protocol
+ Expand
6

Protein Expression Analysis in Tumor Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
Proteins extracted from tumor tissue and cells were separated by Sodium Dodecyl Sulphate-Polyacrylamide Gel Electrophoresis (SDS-PAGE) and transferred to Polyvinylidene Fluoride (PVDF) membranes (Sigma Aldrich). Following blockade with bovine serum albumin (Sigma Aldrich) and incubation with primary antibodies against DSG3 (1:2000, ab218380, Abcam), Src (ab47405) and p-Src (1:2500, p-Tyr418, ab4816 Abcam), FAK (ab131435) and p-FAK (1:3000, p-Tyr397, ab81298, Abcam), AKT (ab235958) and p-AKT (1:3500, p-Ser 473, ab81283, Abcam), and β-actin (1:4000, ab8227, Abcam), the membrane was then incubated with HRP-conjugated secondary antibody (1:5000, ab205718, Abcam), and the signals were detected with chemiluminescence system (Tanon, Shanghai, China).
+ Open protocol
+ Expand
7

Immunostaining of Cytoskeletal Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
CFs were penetrated and incubated with the following primary antibodies at 4 °C overnight: anti-alpha smooth muscle actin antibody (α-SMA, 1:800 dilution, Abcam, ab7817, Cambridge, UK), anti-focal adhesion kinase (phospho Y397) antibody (FAK, 1:800 dilution, Abcam, ab81298, Cambridge, UK), and anti-angiotensin II type-1 receptor antibody (AT1R, 1:100 dilution, Proteintech, 25343-1-AP, Chicago, IL, USA). Then, the cell samples were incubated with the following secondary antibodies in the dark at 37 °C for 2 h: Alexa Fluor-488 goat anti-mouse antibody (1:1000 dilution, Abcam, Ab150077, Cambridge, UK) or Alexa Fluor-594 goat anti-rabbit antibody (1:1000 dilution, Abcam, Ab150116, Cambridge, UK). Cell nuclei were stained using DAPI (1 μg mL−1, Sigma, D9542, St. Louis, MO, USA). Images of the cell samples were obtained using a laser scanning confocal microscope (FV3000 Olympus, Tokyo, Japan).
+ Open protocol
+ Expand
8

Quantifying FA Protein Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
The expression levels of FA proteins were quantified using western blotting (WB) at room temperature (RT). Whole cell proteins were extracted using NuPAGE™ LDS Sample Buffer (Thermo Fisher, Waltham, MA, USA), loaded on Bolt™ Bis-Tris Protein Gel (Thermo Fisher), and blotted onto 0.45 μm PVDF membranes (Thermo Fisher). Proteins were quantified using a Qubit™ Protein Broad Range Assay and Qubit 4 Fluorometer (Thermo Fisher) following the manufacturer’s instruction. Membranes were finally incubated with primary antibodies: GAPDH (AM4300, Thermo Fisher), vinculin (ab129002, abcam), paxillin (ab32084, abcam), FAK (ab40794, abcam), and phospho Y397 FAK (ab81298, abcam) and secondary antibodies: Goat Anti-Rabbit IgG H&L HRP (ab205718, abcam) and Goat Anti-Mouse IgG H&L HRP (G21040, Thermo Fisher) using iBind Western System (Thermo Fisher). All membranes were imaged using a ChemiDoc Touch MP system (Bio-Rad Laboratories, Hercules, CA, USA). Bands were quantified using ImageJ, and statistical data were analyzed using GraphPad Prism 9.
+ Open protocol
+ Expand
9

Immunofluorescence Analysis of Focal Adhesion Kinase

Check if the same lab product or an alternative is used in the 5 most similar protocols
HeLa, CaSki, and C33A cells were seeded on coverslips and exposed to treatments. Cells were fixed with 4% paraformaldehyde for 20 min at room temperature and permeabilized with 0.1% Triton X for 5 min. Blocking was performed with 5% bovine serum albumin (BSA) for 20 min. Cells were incubated with primary antibodies against phospho-Y397-Fak (ab81298, Abcam, USA) overnight at 4 °C and then with FITC-conjugated secondary antibody at RT for 1 h. After washing, F-actin was stained with Acti-stain 555 phalloidin (#PHDH1, Cytoskeleton, Inc.) The nuclei were counterstained with 4′-6-diamidino-2-phenylindole (Sigma-Aldrich). The coverslips were mounted with Vectashield mounting medium (Vector Laboratories, CA). Immunofluorescence was visualized using an Olympus BX41 microscope.
+ Open protocol
+ Expand
10

Quantifying Focal Adhesions by Immunofluorescence

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunofluorescent staining was performed to visualize FA proteins: vinculin, paxillin, and FAK. As mentioned in Section 2.1.4, cells on substrates were fixed with 4% PFA, permeabilized with 0.5% Triton X-100, and blocked with Blocking One Histo. Substrates were then incubated with primary antibodies overnight at 4 °C: vinculin (ab129002, abcam, Cambridge, UK), paxillin (ab32084, abcam), and phospho Y397 FAK (ab81298, abcam) following dilution protocols before labeling with secondary antibodies: Goat Anti-Rabbit IgG H&L Alexa Fluor® 488 (ab150077, abcam) or Goat Anti-Rabbit IgG H&L Alexa Fluor® 647 (ab150083, abcam) for 30 min following dilution protocols. Actin filament and nuclei were stained for 30 min using Acti-stain™ 555 Fluorescent Phalloidin and DAPI, then substrates were imaged using a fluorescence microscope BX-53 with a UPLX Apo 10× objective lens or BZ-X710 microscope (Keyence, Osaka, Japan) with a Plan Apo Lambda 10× or 20× objective lens. Using a protocol designed to quantify the FAs [42 (link), 43 (link)], the average size of the FAs, number of FAs in a cell adhesion site, cell adhesion site, and FA density were quantified using ImageJ software.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!