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6 protocols using tris hcl

1

SARS-CoV-2 Spike Protein RBD Detection

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Oligomers were synthesized with a Cy3 donor-conjugated to its 9-terminus (Cy3-TTTTGGGGG-SH) and a black hole quencher 2 (BHQ2)-coupled oligomers to its 9-terminus as an acceptor (BHQ2-AAAACCCCC-Azide), which were obtained from Bioneer Inc. (Daejeon, Korea). Peptide substrate was conjugated from PEPTRON (Daejeon, Korea). Sodium ascorbate, copper (II) sulfate (CuSO4), and Tris(3-hydroxypropyltriazolylmethyl)amine (THPTA) were obtained from Sigma-Aldrich Company (USA). Tris-HCl (pH 6.8) and Tris-EDTA (TE) buffer (pH 8.0) were purchased from Biosesang (Korea). All other chemicals and reagents were of analytical grade. SARS-CoV-2 (2019-nCoV) spike (S) protein RBD-His recombinant protein (Cat. no. 40592-V08B) was obtained from Sino Biological (China). Human nasal fluid and human saliva fluid were purchased from Innovative.
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2

Ultrastructural Analysis of CD206+ Cells in Retinal Degeneration

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Retinas from blue LED-induced RD mice were fixed with 4% paraformaldehyde in 0.1 M PB for 2 h and transferred to 2.3 M sucrose in 0.1 M PB for 24 h for dehydration. The retinas were then frozen in liquid nitrogen and cut into semi-thin cryosections (2 μm) at −100 °C using a Leica EM UC7 ultramicrotome equipped with an FC7 cryochamber (Leica, Wetzlar, Germany). The sections were blocked with 10% normal donkey serum in PBS for 1 h at room temperature and then labeled at 4 °C overnight using a 1:100 dilution of CD206 antibody. After washing in PBS, the samples were incubated with a secondary donkey anti-rabbit-peroxidase antibody for 1 h (1:100, Sigma). Tissue sections were washed with PBS, followed by rinsing in 0.05 M TB (Tris-HCL, Biosesang, Incheon, Republic of Korea). The sections were then incubated with DAB solution for a few minutes, washed with 0.1 M PB for 10 min, and post-fixed with 2.5% glutaraldehyde and 1% osmium tetroxide for 30 min. Silver enhancement was performed using the HQ silver enhancement kit (Nanoprobes, Yaphank, NY, USA) for 3 min. Sections were dehydrated in graded alcohol and embedded in Epon 812 (Polysciences, Warrington, PA, USA). Areas of interest, selected under light microscopy, were cut into ultrathin sections (80–90 nm) and observed under an electron microscope (JEM 1010, Tokyo, Japan).
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3

Isolation of Extracellular Vesicles from Serum

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tEVs were isolated from serum using ExoQuick solution (System Bioscience, Palo Alto, CA, USA) with some modifications to the manufacturer’s instructions. After centrifugation to remove cell debris, the serum of six animals in each group were pooled. A total of 2 mL of serum and 500 μL of solution were mixed. After the mixture was centrifuged, the pellet was resuspended in 200 μL phosphate-buffered saline (PBS).
nEVs were isolated as described by Mustapic et al. [52 (link)] with some modifications. Exosomes isolated from serum were incubated with anti-CD171 (L1CAM; Bioss Antibodies, Beijing, China) antibody for 1 h at 4 °C on a rotating mixer. After adding Pierce Streptavidin Plus Ultralink Resin (Thermo Fisher Scientific, Waltham, USA) and PBS, the samples were again incubated for 1 h at 4 °C on a rotating mixer. The samples were then pelleted by centrifugation at 200× g for 10 min at 4 °C. The supernatants were removed from the samples and the pellets were resuspended in 200 μL 0.1-M glycine-HCl (Biosesang, Seongnam, Korea). After mixing for 10 s and vortexing for 30 s, the samples were pelleted by centrifugation at 4500× g for 10 min at 4 °C. Finally, the supernatants were transferred to new tubes before Tris-HCl (Biosesang) and PBS were added.
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4

Generation of Immune Cell Cultures

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Phorbol-12-myristate 13-acetate (PMA) was purchased from Cayman Chemical (Ann Arbor, MI, USA). Dulbecco’s phosphate-buffered saline (DPBS), RPMI-1640 culture medium, and fetal bovine serum (FBS) were purchased from Welgene, Inc. (Daegu, Republic of Korea). Dopamine hydrochloride, RGD, and dexamethasone (Dex) were purchased from Sigma-Aldrich (St. Louis, MO, USA). SU-8 3005 and SU-8 developer were purchased from MicroChem (Round Rock, TX, USA). PDMS prepolymer (Sylgard 184) and a curing agent were purchased from Dow Corning (Midland, MI, USA). Norland Optical Adhesive (NOA) 63 was purchased from Norland Products (Jamesburg, NJ, USA). Tris-HCl was purchased from Biosesang (Seongnam, Republic of Korea). Ethylenediaminetetraacetic acid (EDTA) was purchased from Amresco Inc. (Solon, OH, USA). Granulocyte-macrophage colony-stimulating factor (GM-CSF) and interferon (IFN)-γ were purchased from R&D Systems (Minneapolis, MN, USA). Pluronic F-127 solution and antibiotic–antimycotic solution were purchased from Invitrogen Corp. (Waltham, MA, USA). 1,25-dihydroxy vitamin D3 (VitD3) was purchased from Toronto Research Chemicals Inc. (Toronto, ON, Canada).
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5

Engineered Biomaterials for Tissue Regeneration

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Poly(dimethylsiloxane) (PDMS) pre-polymer (Sylgard 184) and a curing agent were purchased from Dow Corning (Midland, MI, USA). Tris-HCl was purchased from Biosesang (Seongnam, Korea). Dopamine hydrochloride and Alizarin Red S were obtained from Sigma-Aldrich (St. Louis, MO, USA). MSCs, HUVECs, MSC growth medium (MSCM), endothelial cell growth medium (ECM), endothelial cell growth supplements (ECGS), MSC growth supplements (MSCGS), fetal bovine serum (FBS), penicillin/streptomycin (P/S) solution, trypsin-EDTA (T/E) solution, Dulbecco’s phosphate-buffered saline (DPBS), MSC chondrogenic differentiation medium (MCDM), MSC chondrogenic differentiation supplement (MCDS), MSC osteogenic differentiation medium (MODM), and MSC osteogenic differentiation supplement A and B (MODS-A and MODS-B) were purchased from ScienCell (Carlsbad, CA, USA). Transforming growth factor-β3 (TGF-β3) and live/dead viability/cytotoxicity kits were purchased from Thermo Fisher Scientific (Waltham, MA, USA). Safranin O was obtained from Polyscience (Warrington, PA, USA). Norland optical adhesive63 (NOA63) was purchased from Norland Products (Jamesburg, NJ, USA). Polystyrene (PS) sheets and poly(ethylene terephthalate) (PET) film were obtained from Goodfellow (Pittsburgh, PA, USA).
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6

Isolation of Extracellular Vesicles using L1CAM

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The nEVs were isolated as described by Mustapic et al., with some modifications in this study [32 (link)]. Briefly, tEV samples containing PBS were incubated with anti L1 cell adhesion molecule (L1CAM; CD171) antibody (Bioss Antibodies, Beijing, China) for 1 h at 4 °C on a rotating mixer. Following the addition of PierceTM Streptavidin Plus Ultralink™ Resin (Thermo Fisher Scientific, Waltham, MA, USA) and PBS, the mixture was incubated for 1 h at 4 °C on a rotating mixer and then centrifuged at 500× g for 10 min at 4 °C. The supernatants were removed, and the pellets were resuspended in 0.1 M glycine-HCl (Biosesang, Seongnam, Korea). Following the mixing and vortexing, the samples were pelleted by centrifugation at 4500× g for 10 min at 4 °C. The supernatants were transferred to fresh tubes, and Tris-HCl (Biosesang, Seongnam, Korea) and PBS were added.
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