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180 protocols using clarity max western ecl substrate

1

Western Blot Analysis of Protein Signaling

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Protein concentrations were determined according to the Bradford method using BSA as standard. Cell lysates (10–20 μg per sample) were then separated by 5–20% SDS-PAGE with known molecular weight markers (Bio-Rad, California, USA) and transferred onto polyvinylidene fluoride membranes by standard procedures. Membranes were incubated in blocking solution (5% skim milk or BSA in TBS-T) for 3 h at room temperature, and hybridized overnight at 4°C with primary antibodies against vinculin (Sigma) (1:4000), AdipoR1 (Immuno-Biological Laboratories Inc., Minneapolis MN) (2 μg /ml), and also Akt (1:1000), phospho-Akt (s473 or t308) (1:1000), AMPK (1:1000), phospho-AMPK (1:1000) all from Cell Signaling Technology (CST, Danvers, MA, USA). The membranes were washed three times with TBS-T and then incubated with either anti-rabbit (Sigma) (1:10000) or anti-mouse (Abcam, Cambridge, U.K.) (1:10000) secondary antibodies for 1 h at room temperature. After washing, immunodetection was performed using an enhanced chemiluminescence solution (Clarity Max Western ECL Substrates, Bio-Rad) and scanned on Fujifilm LAS-3000 system and quantified using Image-J software (National Institutes of Health).
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2

Western Blot Analysis of Rat Cardiomyocytes

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Rat H9c2 cardiomyocytes were lysed in SDS lysis buffer (50mM Tris-HCl, pH 8.1; 1% SDS, 10 mM EDTA, PH 8.0) with proteinase inhibitor cocktail (Roche, #11836170001, Basel, Switzerland). The homogenate was then centrifuged at 12,000×g for 10 min (4°C) and the protein concentrations of supernatants were determined using a bicinchoninic acid protein assay kit (Thermo Fisher Scientific, Inc., #23227, Waltham, MA, USA). 30 ∼ 50 μg protein was loaded onto 12% SDS-PAGE gels and then transferred onto polyvinylidene fluoride membranes (Millipore, Billerica, MA, USA). After blocking with 5% non-fat milk in Tris-buffered saline with Tween 20, membranes were incubated with different primary antibodies (dilution: 1:1000) at 4°C overnight, followed by HRP-conjugated secondary antibody (dilution: 1:5000) at room temperature for 1 h. GAPDH was used as a loading control for protein normalization. Enhanced chemiluminescence (ECL) was performed using Clarity Max™ Western ECL Substrates (Bio-Rad, Inc., #1705062, Hercules, CA, USA). The relative band intensity was analyzed by the ImageJ software (NIH, Bethesda, MD, United States).
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3

Quantifying Rubisco Levels in ΔRpi Strain

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Δrpi strain with WT rubisco was grown under selective conditions (overnight at 37 °C in M9 media with 0.4% glycerol and 20 nM aTc) with varying IPTG concentrations at 5% CO2 for 24h. Afterwards, turbid cultures were spun down (10 min; 4,000 g; 4°C) culminating in roughly 20 mg pellet per sample. Pellets were lysed with 200 μL of BPER II and supernatant was transferred into a fresh tube and mixed with SDS loading dye. BioRad RTA Transfer Kit for Transblot Turbo Low Fluorescence PVDF was used in combination with the Trans-Blot® Turbo Transfer System. Nitrocellulose Membrane was carefully cut between 50 and 70 kDa post-blocking using a razor blade. Primary Anti-RbcL II Rubisco large subunit Form II Antibody from Agrisera (1:10000) and DnaK Antibody from Abcam (1:5000) were incubated separately. Secondary HRP-conjugated antibodies Donkey anti-mouse for DnaK (Santa Cruz Biotechnology) and Goat pAB to RB IgG HRP (Abcam were both used at 1:10000. Subsequently BioRad Clarity Max Western ECL Substrates were applied and the final results were imaged using a GelDoc.
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4

Redox-sensitive Protein Detection in Cardiomyocytes

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NEM-alkylated redox Western-blotting was performed to detect the redox status of HSPB1 and KEAP1 as we previously reported.59 (link) After treatment, rat H9c2 cardiomyocytes were washed twice with ice-cold phosphate buffer saline (PBS) and then precipitated with chilled 10% trichloroacetic acid for 30 min at 4°C. The homogenate was then centrifuged at 12,000×g for 10 min (4°C), the harvested protein pellets were washed twice with 100% acetone and dissolved in nonreducing buffer (100mM Tris-HCl, pH6.8; 2% SDS; and 40 mM NEM), and 5% dithiothreitol was added to the samples. 30 ∼ 50 μg protein was loaded onto a non-reducing SDS-PAGE gels and the proteins were transferred onto polyvinylidene fluoride membranes (Millipore, Billerica, MA, USA). After blocking with 5% non-fat milk in Tris-buffered saline with Tween 20, membranes were incubated with different primary antibodies (dilution: 1:1000) at 4°C overnight, followed by HRP-conjugated secondary antibody (dilution: 1:5000) at room temperature for 1 h. Enhanced chemiluminescence (ECL) was performed using Clarity Max™ Western ECL Substrates (Bio-Rad, Inc., #1705062, Hercules, CA, USA). The relative band intensity was analyzed by Quantity One software (Bio-Rad, Inc., Hercules, CA, United States).
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5

Western Blot Protein Analysis

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The whole-cell lysates prepared with Laemmli cell lysis buffer were separated on TGX FastCast acrylamide gels (BioRad, Mississauga, ON). Nitrocellulose membranes and the Trans-Blot Turbo system (Bio-Rad) were used for protein transfer. The non-specific antibody binding sites were blocked with 5% non-fat milk in TBST, pH 7.6 for 1h at RT. Antibodies and incubation conditions are listed in Table 1. Proteins were visualized using Clarity (Max) Western ECL Substrates (Bio-Rad, Cat. 1705060, Cat. 1705062) and ChemiDoc MP Imaging System (Bio-Rad). Band volume quantification (densitometry) was done in the Image Lab (Bio-Rad).
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6

Western Blot Analysis of E-cadherin in C. albicans Infection

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Western blotting was performed with a standard protocol as described in Kurien and Scofield (73 (link)) using protein lysates from VK-2 cells infected with C. albicanstca17Δ/Δ mutant or control and complemented strains for 6 and 24 h in keratinocyte SFM at 37°C and 5% CO2. The blot was then hybridized overnight in 1× Tris-buffered saline casein blocking buffer (Bio-Rad, Hercules, CA) with a 1:500 dilution of an E-cadherin primary antibody (R&D, Minneapolis, MN) or 1:1,000 dilution of a tubulin antibody (Invitrogen, Waltham, MA) as a loading control. After washing, the blot was incubated with an anti-mouse horseradish peroxidase (HRP) secondary antibody (Invitrogen, Waltham, MA) for 1 h. Protein detection was performed using Clarity Max Western ECL substrates (Bio-Rad, Hercules, CA) and imaged with a ChemiDoc imaging system (Bio-Rad, Hercules, CA).
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7

Fibroblast Protein Quantification Protocol

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Fibroblasts were lysed in 1X Radio-Immunoprecipitation Assay buffer (Sigma-Aldrich) with the addition of 1X PhosSTOP (Roche, Sigma-Aldrich) phosphatase inhibitor and 1X cOmplete Mini (Roche, Sigma-Aldrich) protease inhibitor. Protein concentrations were determined from cleared lysates using Pierce BCA Protein Assay Kit (Thermo Fisher Scientific) and 30 μg of protein taken for electrophoresis in 12–15% sodium dodecyl sulfate–polyacrylamide gels or Mini-PROTEAN precast gels (Bio-Rad Laboratories). Gels were transferred to nitrocellulose membranes, blocked with either 5% non-fat milk or bovine serum albumin (BSA), probed with primary and corresponding secondary antibodies, detected with Clarity Max Western ECL Substrates (Bio-Rad Laboratories), and imaged and processed using a ChemiDoc Imaging System and corresponding ImageLab software (Bio-Rad Laboratories). Exposures were automatically determined using the ChemiDoc Imaging System. Densitometric analyses were performed using ImageJ software (version 1.54f., National Institutes of Health, Bethesda, MD). To quantify protein levels released by fibroblasts, pro-collagen 1α1 and fibronectin, supernatants were collected at experimental endpoints and ELISAs were conducted using kits from R&D Systems (Minneapolis, MN), following manufacturer’s protocol.
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8

PAD4 Expression in Murine Tissues

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Murine tissue and cell lysates from the skin, spleens, LNs, and purified macrophages were prepared by homogenization in Ripa buffer and 1% protease inhibitor cocktail. Protein concentrations were determined using BCA Protein assay and 25 g protein / sample were separated by SDS PAGE. Recombinant mouse PAD4 and GAPDH were used as controls, and MW markers were included. Proteins separated by SDS-PAGE were imaged by UV then transferred to nitrocellulose membranes and the immunoblots were incubated with mouse anti-PAD4 (Santa Cruz, sc-365369) diluted 1:500 followed by goat anti-mouse IgG-HRP (Santa Cruz, sc-2005) at 1:2000 dilution. Clarity Max Western ECL Substrates (Bio-rad,   1705061) was used for detection and membranes were exposed to Amersham films that were developed and fixed.
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9

Exosome and Tissue Protein Analysis

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Isolated APPNL-F and WT exosome samples were lysed with 5× RIPA buffer with Triton X-100 (AAJ62885AD, Fisher) and 25× P8340 (protease inhibitor cocktail) to a final concentration of 1× RIPA +1% P8340. Total protein amount for exosome and cortical homogenate samples was determined using a DC Protein Assay Kit II (Bio-Rad) per manufacturer’s instructions. For exosome samples, 30 μL of the final lysate was loaded on 4–15% Mini-PROTEAN TGX Stain-Free Protein Gels (Bio-Rad). Tissue homogenates were diluted for a final loading protein content of 30 μg (20 μL loaded per lane). Separated proteins were then transferred onto a PVDF membrane (Bio-Rad) with the Trans-Blot Turbo Transfer System (Bio-Rad). The membrane was blocked with 5% fat-free skim milk in TBST (Tris-buffered saline +0.05% Tween-20) or Super-Block T20 (TBS) Blocking Buffer (Thermo Scientific) then incubated with primary antibody overnight at 4 °C (Alix [clone 1A12], 1:500, Santa Cruz; human APP [clone 6E10], 1:1000, BioLegend). Secondary antibodies, including ECL anti-mouse IgG (1:10000, GE Healthcare NA931V) are diluted with Super Blocking Buffer. Bands were visualized on Chemidoc MP imaging system (Bio-Rad) with ECL Plus chemiluminescent substrate (Thermo Fisher Scientific) or Clarity Max Western ECL Substrate (Bio-Rad).
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10

Western Blot Analysis of Cell Signaling

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Cell samples were lysed with RIPA lysis buffer, consisting of 50 mM Tris-HCl (pH 8.0), 150 mM NaCl, 1 mM EDTA, 1% Nonidet P-40 (volume-to-volume), 0.1% sodium dodecyl sulfate (SDS), 0.25% sodium deoxycholate, 1 mM sodium orthovanadate, and 1 mM phenylmethylsulfonyl fluoride, in the presence of protease inhibitor cocktail (catalog no. P8340, Sigma-Aldrich, St. Louis, MO) at a 1:100 dilution. The lysates were mixed with loading buffer, heated at 100°C for 10 minutes and then loaded on an SDS polyacrylamide gel. After electrophoresis, the proteins were transferred to polyvinylidene difluoride membranes. The membranes were incubated overnight with primary antibodies ELL2 (A302-505A, Bethyl Laboratories, Montgomery, TX), STAT1 (9172S, Cell Signaling Technology, Danvers, MA), p-STAT1 (9167S, Cell Signaling Technology), p-CDK2 (2561, Cell Signaling Technology), cyclin D1 (sc-8396, Santa Cruz Biotechnology, Dallas, Texas), cyclin E (sc-247, Santa Cruz Biotechnology), or GAPDH (sc-47724, Santa Cruz Biotechnology) overnight. Following incubation with an appropriate secondary antibody, the membranes were incubated in Clarity Max Western ECL Substrate (1,705,062, Bio-Rad Laboratories, Hercules, CA) for 2 minutes, and visualized using ChemiDoc™ Touch Imaging System (Bio-Rad Laboratories, Hercules, CA).
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