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31 protocols using ba310

1

Trophoblast Integrity Assessment in Placenta

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Tissue samples were deparaffinated with alcohol and xylene, and antigen retrieval was achieved by steaming the samples in sodium citrate buffer for 30 min. A polyclonal anti-CK-7 IgG antibody (Cat. Number: MA1-06316) was added to assess the integrity of the trophoblast, followed by a secondary peroxidase-conjugated antibody. The antigen–antibody complex was visualized using DAB chromogen, and nuclear contrast was provided by Mayer's hematoxylin. A negative control was established using phosphate buffer instead of the primary antibody. Ten random fields from each sample were selected to determine the frequencies of the studied variables, including trophoblast detachment, trophoblast rupture, and villi denudation. Following the methodology described previously [21 (link)]. The slides were examined by two trained microscopists who conducted histological analysis at different times using light microscopy (Motic BA 310) at 40× magnification (total magnification = 400), and the photos were taken with the Motic Images Plus 2.0 Program.
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2

Phenotypic characterization of Cephalotrichum gorgonifer

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For phenotypic characterization, the strain Cephalotrichum gorgonifer NG_p51 was transferred on Potato Dextrose Agar (PDA, Fluka), Malt Extract Agar (MEA, Merck) and Oatmeal Agar (OA) as described by [76 ] and incubated for 14 days in the dark at 25 °C. For comparative description of the macroscopic and microscopic characteristics, OA was used according to [36 (link)], and additionally compared to [38 , 39 ] where the fungus is described and illustrated under the name Trichurus spiralis (current name: Cephalotrichum gorgonifer [36 (link)]). The photomicrographs were taken using a Motic BA 310 microscope with Motic Image Plus 3.0 software. Lactophenol blue was used as a mounting medium for microphotography. Photographs of the colonies were taken with a Sony DSC-RX100.
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3

Cyanobacteria Taxonomic Identification and Quantification

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Taxonomic identification of cyanobacteria was conducted similarly to Tokodi et al. [16 (link)] and according to different taxonomic keys [18 ,19 ,20 ]. Identification was conducted under a Motic BA310 (Wetzlar, Germany) light microscope using a Bresser (9MP) digital camera and Micro Cam Lab software (Bonneuil, France). Quantitative analyses were conducted under a Motic AE2000 (Wetzlar, Germany) inverted microscope according to the Utermöhl method [21 (link)], where the phytoplankton was sedimented, and cyanobacteria were quantified in a counting chamber under different magnifications depending on cell size. Numbers of cyanobacteria are expressed as numbers of cells per mL.
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4

Soleus and EDL Muscle Cryosectioning and Staining

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Transverse cryosections (10 μm) were cut from the midpoint of the soleus and EDL muscles, and mounted on positively charged microscope slides (Lomb Scientific) for qualitative analysis. Both EDL and soleus slides used for direct comparison were periodic acid–Schiff stained (PAS) simultaneously, to ensure all samples were treated identically and stain intensity would be similar. Images were taken using a Motic BA310 microscope mounted with a Moticam 5 camera running Motic image plus 2.0 software (Motic, China).
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5

Cyanobacterial Identification and Quantification

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Cyanobacterial taxa were identified at 100 ×, 400 × magnification in accordance with several taxonomic keys (Komárek, 2013 ; Komárek & Anagnostidis, 1998 , 2005 ) under the Motic BA310 light microscope equipped with a digital camera (Bresser 9 MP) and Micro Cam Lab software. The quantitative analysis of phytoplankton was made with a Motic AE 2000 inverted microscope using the Utermöhl method (Utermöhl, 1958 ), expressing data as number of cells per ml (Marinović et al., 2021 (link); Tokodi et al., 2020 (link)).
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6

Microscopic analysis of vaginal tissues

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The vaginal tissue removed from each animal was fixed in 4% paraformaldehyde, paraffin embedded and cut into thin sections (5 μm). The sections were stained with Grocott-Gomori's methenamine silver (GMS) to visualize fungi, and counterstained with hematoxylin and eosin (H&E) for the characterization of host cells [27 (link)]. Additionally, to assess the toxicity of the studied formulations, vaginal tissue from non-infected animals was stained with H&E. All stained slides were immediately washed, preserved with mounting medium and sealed with a coverslip. Then, they were observed and photographed using a binocular light microscope (Motic BA310), coupled to a camera (Moticam 5) and to a computer, using Motic Images Plus 2.0 software. The analyzed parameters (epithelial changes and presence of C. albicans) were descriptive and examined by a single researcher oriented by a pathologist and both were blinded to the analysis of the groups.
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7

Macroinvertebrate and Macrophyte Identification Protocol

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Sediment samples were rinsed on a sieve (0.5 mm) with tap water and the remaining material was sorted under a stereoscopic microscope Leica EZ4. Isolated macroinvertebrates were placed in separate vials with 70% ethanol. A similar procedure was applied for macrophytes with additional careful examination and cleaning of each macrophyte sample.
For the identification of chironomid larvae, native slides for immediate inspection were prepared using ethanol as a mounting medium, and for some specimens, it was necessary to prepare permanent slides in Berlese mounting medium. Identification keys: Caspers and Cranston,48
Wiederholm,49
Schmid,50
Brooks et al.,51
Moller Pillot,52 –54 (link, link) Bitušík and Hamerlík,55
and Vallenduuk56
were used for identification to the lowest possible taxonomic level, under a Motic BA310 microscope.
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8

Integrated Microscopy and Spectroscopy Analysis

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A Motic BA310
metallurgical microscope equipped with a 50× objective
(NA = 0.55 and WD = 8.2 mm) was modified to enable optical inspection
with a microscope and spectroscopy analysis of the same sample area.
A halogen light source was used as an optical probe that was split
at a 50:50 ratio by a modified trinocular. 50% was coupled to an optical
fiber and used for signal analysis by the Thorlabs ccs 200/m CCD spectrometer,
while the other 50% was used for sample imaging.
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9

Stomatal Characterization in Wheat and Triticale

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For both wheat and triticale, stomatal characterization was performed on the abaxial surface of mature flag leaves (sections from the middle to avoid differential thickness along the leaf), during the 2014 (WW) and 2015 (WW and WL) seasons in Santa Rosa. The characterization process consisted of removal of leaf hairs with transparent adhesive tape and coating the leaf with clear varnish (Bacelar et al., 2006 (link); Guerfel et al., 2009 (link)). The dried stomatal impressions were carefully detached with adhesive tape attached to a slide (Ennajeh et al., 2010 (link)) and then three photographs were taken with the microscope (Motic BA-310, China). The photographs were analyzed with the Matlab program, while the Motic Images Plus 2.0ML program was used to evaluate stomatal size. The number of stomata was counted in 1.27 mm2, equivalent to the diameter of the observed field of the image. For size, five stomata were selected in each image and length and width determination were performed.
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10

Listeria Strains Characterization Protocol

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A total of 42 Listeria spp. strains were considered as reported in Table 1. Part of these strains, belonging to the European Union Reference Laboratory (EURL) set, were supplied by the National Reference Laboratory for Listeria monocytogenes (strains from 1 to 25), while the other strains belong to the internal laboratory collection and were isolated from food of animal origin (strains 26 to 31) or environmental samples (strains from 34 to 42). Also two American Type Culture Collection (ATCC) strains were used (strains 32 and 33). Strain stocks were kept at -80°C until a loop (~10 μL) was transferred in Tryptic Soy broth tubes, subsequently incubated at 37°C for 48h. At the end of the incubation period, cells were harvested in exponential growth phase, defined as a relative change in optical density (OD) of 0.05-0.2 at 540 nm (6320D spectrophotometer; Jenway, Staffordshire, UK). Cell concentration of each bacterial strain suspension was calculated by counting under a phase-contrast microscopy (BA 310, Motic, Barcelona, E) and, if necessary, was diluted in sterile saline water (0.85% NaCl), to obtain a concentration of 8 Log CFU/mL.
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