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64 protocols using glutaraldehyde

1

Oligomeric State Analysis of NFL Fragments

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The oligomeric state of all NFL fragments was obtained from SEC data coupled with chemical cross-linking by glutaraldehyde (TED PELLA, Redding, CA, USA). The SEC was performed in 5 mM HEPES buffer, pH 8.0, containing 0.5 mM EGTA and 2 mM DTT. 250 µL of samples containing 2 mg/mL of proteins was applied on a Superose 6 Increase 10/300 GL column (GE Healthcare, Uppsala, Sweden). The protein elution was performed at 1 mL/min. The chemical cross-linking of samples collected after SEC was carried out in 5 mM HEPES buffer, pH 8.0, containing 0.5 mM EGTA by the addition of an aqueous solution of glutaraldehyde (TED PELLA, Redding, CA, USA). The glutaraldehyde concentrations were 0.008% and 0.024%. The cross-linking was performed at 30 °C for 60 min, and the samples were analyzed by SDS-PAGE in 12.5% gel.
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2

Mouse Tissue Fixation for TEM Analysis

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Transcardial perfusion was performed to fix mouse tissues using paraformaldehyde/glutaraldehyde perfusant [2% paraformaldehyde (Ted Pella Inc., Redding, CA) + 2.5% glutaraldehyde (Ted Pella Inc., Redding, CA) + 2mM CaCl2 in 0.1M sodium cacodylate (Ted Pella Inc., Redding, CA), pH = 7.4]. Prostate tissues were dissected after perfusion and processed for electron microscopic analysis. Samples were stained with saturated uranyl acetate and Reynold’s lead citrate and reviewed using a Hitachi H7500 transmission electron microscope.
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3

Mouse Tissue Fixation for TEM Analysis

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Transcardial perfusion was performed to fix mouse tissues using paraformaldehyde/glutaraldehyde perfusant [2% paraformaldehyde (Ted Pella Inc., Redding, CA) + 2.5% glutaraldehyde (Ted Pella Inc., Redding, CA) + 2mM CaCl2 in 0.1M sodium cacodylate (Ted Pella Inc., Redding, CA), pH = 7.4]. Prostate tissues were dissected after perfusion and processed for electron microscopic analysis. Samples were stained with saturated uranyl acetate and Reynold’s lead citrate and reviewed using a Hitachi H7500 transmission electron microscope.
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SEM Analysis of Biomaterial Differentiation

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SEM analysis of the biomaterials was performed prior to differentiation and after DPPSC and SAOS-2 cells were differentiated on the biomaterials. The samples were fixed with 2.5% glutaraldehyde (Ted Pella Inc.) in 0.1 M Na-cacodylate buffer (EMS, Electron Microscopy Sciences, Hatfield, PA, USA) (pH 7.2) for 1 h on ice. After fixation, the samples were treated with 1% osmium tetroxide (OsO4) for 1 h. The samples were then dehydrated in serial solutions of acetone (30–100%) with the scaffolds mounted on aluminum stubs. The samples were examined with a Zeiss 940 DSM scanning electron microscope.
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5

Ultrastructural Analysis of Biological Samples

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The cells were fixed for 30 min with 2.5% glutaraldehyde (Ted Pella Inc., Redding, CA, USA), washed with PBS (pH 7.2–7.4), and postfixed with 1% OsO4 solution in PBS (pH 7.2–7.4; Sigma-Aldrich) for 1 h. Dehydration and embedding in Epon 812 (Sigma-Aldrich) were performed using the standard technique. Ultrathin sections of Epon-embedded samples were stained with 1.5% uranyl acetate solution and lead citrate according to Reynolds [37 (link)] and analyzed with a JEM-1011 transmission electron microscope (JEOL, Tokyo, Japan) equipped with a GATAN ES500W digital camera operated by the Digital Micrograph GATAN software.
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6

TEM Imaging of C. elegans AMsh Cells

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For transmission electron microscopy (TEM), samples were fixed quickly for 24 hours in 2% paraformaldehyde (Sigma-Aldrich, St. Louis, Missouri, USA), 2.5% glutaraldehyde (Ted Pella, Redding, California, USA), and 0.003% CaCl2 (Sigma-Aldrich) in sodium cacodylate buffer (Sigma-Aldrich), post-fixed in 2% osmium tetroxide (Ted Pella), dehydrated in an acetone dilution series (30%, 50%, 70%, and 90%, followed by 3 × 100%), and embedded with Eponate 12 resin (Electron Microscopy Sciences, Hatfield, Pennsylvania, USA). Sections for TEM were cut to a thickness of 70 nm with diamond knives and a Leica EM UC7 ultramicrotome (Leica, Wetzlar, Germany). The sections were stained with either 2% (w/v) aqueous uranyl acetate and 1% (w/v) lead citrate. Specimens were viewed with a TecnaiG2 Spirit 120kV (Thermo Fisher, Waltham, Massachusetts, USA) transmission electron microscope.
Due to size variability between wild-type and eas-1(lf) animals (S1B Fig), the relative position of the AMsh cell body on the animal was used to determine where to section the animals. The relative position of the AMsh cell body was measured to be consistent and similar between both genotypes, at around 0.12 times the total length of the animal from the nose tip (S1J Fig). Sections around this region were used for TEM imaging, and the AMsh cell bodies were identified in reference to micrographs from WormAtlas [76 ].
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Ultrastructural Analysis of HUVEC Morphology

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Grouping design and cell culture conditions were the same as those used for cell cycle analysis. Briefly, HUVECs were collected following incubation for 3 days at 37°C, fixed in 3% glutaraldehyde (lot, 2191108; Ted Pella, Inc.) for 10 h at 4°C, postfixed in 1% osmium tetroxide (lot, 4008-182802-100118; Ted Pella, Inc.) for 1 h at 4°C, dehydrated in graded ethanol at room temperature, and subsequently embedded in Epon. Thin sections were mounted on copper grids, stained with lead citrate (lot: 180705; Ted Pella, Inc.) for 30 min at room temperature. Transmission electron microscopy (JEM 1400; JEOL, Ltd.) was used to observe the morphological changes in the HUVECs.
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8

Ultrastructural Analysis of Rat Optic Nerve

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The optic nerve heads of three rats from each group were separated on ice and immediately fixed in 2.5% glutaraldehyde (Ted Pella, Redding, CA, United States) in 0.1 M phosphate buffer at 4°C. After rinsing in 0.1 M phosphate buffer for three times, tissues were post-fixed in 1% osmic acid at 4°C for 2 h, washed for three times, dehydrated in ascending grades of ethyl alcohol, and embedded in epoxy resin. Then sections on unmyelinated optic nerve were sliced and then viewed using a transmission electron microscope.
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9

Electron Microscopy of Arterial Samples

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After fixation of arterial samples in 2.5% glutaraldehyde (TED PELLA, CA, USA) in PBS (pH 7.2), specimens were post-fixed in 1% osmium tetroxide (Heraeus, Hanau, Germany), dehydrated in graded ethanol and propylene oxide (Acros Organics, USA), and then embedded in Epoxy resin (mix with Nadic Methyl Anhydride (NMA) and Dodecenyl Succinic Anhydride (DDSA) and DMP-30, all reagents from Polysciences (PA, USA). Serial ultrathin sections were cut using an LKB-III ultratome (LEICA, Wetzlar, Germany). Ultrathin sections were stained with uranyl acetate (TED PELLA, CA, USA) and lead citrate (TED PELLA, CA, USA) and were examined with the aid of a Hitachi H7600 electron microscope (Hitachi, Japan) at an accelerating voltage of 100 kV.
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10

XTT-Based Cell Viability Assay

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Roswell Park Memorial Institute (RPMI) 1640 culture medium, phosphate saline buffer (PBS), 2,3-bis (2-methoxy-4-nitro-5-sulfophenyl)-2H-tetrazolium-5-carboxanilide salt (XTT) (0.5 g L−1, in PBS), and menadione (for 3 μM final concentration) (Pierce et al., 2008 (link)) were acquired from Sigma-Aldrich (MO). Osmium tetroxide (OsO4; 4% solution) and glutaraldehyde (2.5% solution) were acquired from Ted Pella, Inc. Solutions of the different reagents were prepared in Milli-Q water.
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