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Rnascope 2.5 universal pretreatment reagents

Manufactured by Advanced Cell Diagnostics
Sourced in United States

The RNAscope 2.5 Universal Pretreatment Reagents are a set of laboratory solutions designed to prepare samples for RNA in situ hybridization analysis. The reagents are used to pretreat tissue sections or cell samples prior to the hybridization process, which is a critical step in the RNAscope detection workflow.

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3 protocols using rnascope 2.5 universal pretreatment reagents

1

Fluorescent In Situ Hybridization for AC3 in Brain Sections

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Brain sections (14 μm) were cut using a cryostat and mounted onto Colorfrost Plus slides (Thermo Fisher Scientific). In situ hybridization (ISH) was performed using the RNAscope system (Advanced Cell Diagnostics, Newark, CA, United States) according to the manufacturer’s protocol. Sections were pretreated with hydrogen peroxide for 10 min at RT, followed by target-retrieval solution and Protease III using RNAscope 2.5 Universal Pretreatment Reagents (#322381; Advanced Cell Diagnostics). Then the commercial probe for AC3 (#478071-C1) was used. After hybridization, the RNAscope Multiplex Fluorescent Detection Kit v2 (#323110) was used to amplify signal. After ISH, sections were labeled with anti-SST antibody (goat, 1:500, sc-7819; Santa Cruz), followed by its corresponding secondary antibody (Alexa Fluor 488 donkey anti-goat, 1:200, A-11055; Invitrogen). Images were captured with a confocal laser-scanning microscope (Model FV1000; Olympus).
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2

Multiplexed RNA Profiling of Interneurons

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The frozen brain tissue was sliced into 10 μm coronal sections and mounted onto Colorfrost Plus slides (ThermoFisher, Waltham, MA, USA). Slices were incubated with hydrogen peroxide 10 min RT, target-retrieval solution and Protease III using RNAscope® 2.5 Universal Pretreatment Reagents (Advanced Cell Diagnostics, #322380, Newark, CA, USA). smFISH for all genes examined, Rac1 (#517461), Arhgef6 (#574371), EGFP (#400281-C3), Sst (#404631-C2), Pvalb (#421931-C2), and Oprd1 (#427371-C3) were performed hybridization for 2 h. After hybridization, we used the RNAscope® Multiplex Fluorescent Detection Kit v2 (#323110) to amplify signal and mounted. Images were acquired with a Nikon A1 microscope using 20× objective. IOD in SST+ or PV+ neurons was analyzed by Image-Pro Plus 6.0 (Media Cybernetics, Rockville, MD, US). The observer analyzing the expression of DOR, MOR,Rac1, and Arhgef6 in SST, or PV INs was blinded to the group allocation.
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3

RNAscope Dual-color In Situ Hybridization

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Mice brains were removed after perfusion, and 10-μm coronal sections were sliced from the frozen brain tissue and mounted on Colorfrost Plus microscope slides (Thermo Scientific, Waltham, USA). Slices were pretreated with hydrogen peroxide for 10 min at room temperature, and RNAscope 2.5 Universal Pretreatment Reagents (ACD: 322380, Advanced Cell Diagnostics, Newark, CA, USA) were used to perform target retrieval and proteolysis. In situ hybridization was then performed for 2 h at 40 °C with the probes of Egfp-C1 (ACD: 400281-C1) and Drd2-C2 (ACD: 406501-C2). After hybridization, RNAscope Multiplex Fluorescent Reagent Kit (ACD: 323110) was used to amplify the signal. After hybridization, the brain section was washed by 1 × wash buffer (PN 310091). Fluorescent images were captured by a Nikon-A1 confocal microscope with the 20 × air objective lens. The mRNA levels of Drd2 were analyzed by ImageJ (Fiji) (https://imagej.net/software/fiji/).
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