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15 protocols using nrf2 16396 1 ap

1

Western Blot Analysis of Protein Biomarkers

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Cells were lysed with 10 μL/mL Radio-Immunoprecipitation assay Lysis Buffer containing protease inhibitors (Beyotime), centrifuged at 14,000 × g, and quantified by bicinchoninic acid protein assay (Beyotime). Total protein (20 μg) was loaded into a sodium lauryl sulfate polyacrylamide gel and separated. Then, the sample was electroblotted onto a polyvinylidene fluoride membrane (Millipore, Billerica, MA, USA), blocked with 5% skim milk, and incubated with the following primary antibodies: β-actin (A5441, MilliporeSigma), KLF6 (14716-1-AP, Proteintech), Nrf2 (16396-1-AP, Proteintech), NF-κB (14220-1-AP, Proteintech), p-NF-κB (8242, Cell Signaling Technology), HO-1 (10701-1-AP, Proteintech), Bax (50599-2-Ig, Proteintech), Bcl-2 (12789-1-AP, Proteintech), and Ki-67 (27309-1-AP, Proteintech). The membrane was then incubated with the secondary antibody conjugated with horseradish peroxidase (Beyotime), developed by enhanced chemiluminescence kit (Amersham Pharmacia Biotech, Little Chalfont, UK) and imaged by ChemiDoc XRS imaging system. Image J image analysis software was used for data analysis. Three independent replicates were performed for each group.
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2

Western Blotting for Protein Analysis

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The protocol of Western blotting was based on that of a previously published study (14 (link)). The same amounts of proteins were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred to nitrocellulose membranes. The membranes were then blocked in 5% skim milk for at least 2 h and incubated with primary antibodies at 4 °C overnight and secondary antibodies at room temperature for 1 h. Antibodies against PSMD12 (11412-1-AP; Proteintech, China), FLAG (F1804; Sigma, USA), Nrf2 (16396-1-AP; Proteintech, China), NRBP2 (21549-1-AP; Proteintech, China), p-Akt (4060; Cell Signaling Technology, USA), Akt (2920; Cell Signaling Technology, USA), p-mTOR (5536; Cell Signaling Technology, USA), mTOR (2983; Cell Signaling Technology, USA), and β-actin (A5441; Sigma, USA) were used.
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3

Western Blot Protein Detection Protocol

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Cells were lysed using Nonidet-P40 lysis buffer (1% NP-40, 150 mM NaCl, 10% glycerol, 1 mM EDTA, and 20 mM Tris-HCl [pH 7.4]). Then, the membranes were blocked with 5% skim milk in TBS-Tween 20 (TBST), incubated with primary antibodies overnight at 4 °C and then incubated with secondary antibodies for 1 h at room temperature. For the detection of ELOVL5 protein, the samples were not boiled as previously described8 (link). Primary antibodies against ACC (3662, 1:1000), ACC-p (3661,1:1000), FASN (3180,1:1000), FTH1 (3998,1:1000), S6K (9202,1:1000) and S6K-p (9205,1:1000) were purchased from Cell Signaling Technology (USA). SREBP1 (557036,1:1000) was purchased from BD Biosciences (USA). ELOVL5 (sc-398653,1:2000), ACSL4 (sc-365230,1:1000), FSP1 (sc-377120,1:1000), PEBP1 (sc-376925,1:2000) and HSP90 (sc-13119,1:3000) were procured from Santa Cruz (USA). GPX4 (ab125066,1:2000) and Na/K ATPase (ab76020,1:1000) were purchased from Abcam (UK). NRF2 (16396-1-AP,1:1000) and FADS1 (10627-1-AP,1:1000) were obtained from Proteintech (USA). LPCAT3 (16-999,1:1000) was purchased from ProSci (USA). Flag (F3165,1:3000), β-actin (A5316,1:10,000) and α-tubulin (T9026,1:10,000) were purchased from Sigma-Aldrich (USA). Detailed information on materials and cells used in our study is presented in Supplementary Table 4.
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4

Western Blot Analysis of YAP, Phospho-YAP, and Nrf2

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Proteins from ileum samples and organoids were extracted using RIPA lysis buffer (P0013B, Beyotime, China) and separated on a 12% SDS-PAGE gel. The proteins were then transferred onto a nitrocellulose membrane, which was blocked with 5% bovine serum albumin for 1 h, and then incubated overnight with YAP (sc-101199, Santa Cruz Biotechnology) antibody, Phospho-YAP (Ser127) (13008 T, Cell Signaling Technology, USA) antibody, Nrf2 (16396-1-AP, Proteintech, China) antibody and GAPDH antibody (10494–1-AP, Proteintech, China) at 4 °C. The membrane was then incubated with horseradish peroxidase-conjugated secondary antibody (SA00001-1, SA00001-2, Proteintech, China) for 1 h at room temperature. After the application of enhanced chemiluminescence (32209, Thermo Fisher Scientific, Inc., USA), imaging was done using the COMPLEXTM2000 Automated Chemiluminescent Imaging System (Bioworld, Shanghai, China).
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5

Detecting Nuclear NRF2 Localization

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HCC cells were seeded in 24-well plate with 48 h of different treatments, then fixed in 4% paraformaldehyde for 30 min, followed by permeabilized with 0.3% Triton X-100 (Solarbio, Beijing, China) for 15 min and blocked with 5% albumin from bovine serum (Solarbio, Beijing, China) for 20 min at room temperature, followed by incubating primary antibodies against nuclear location of nuclear factor E2-related factor 2 (NRF2, 16396-1-AP, Proteintech, Wuhan, China). After gently washing with PBS, cells were subsequently incubated with appropriate secondary fluorescent antibodies (ZSGB-BIO, Beijing, China) for 1 h at room temperature. The nucleus was stained with Hoechst 33324 (Solarbio, Beijing, China). The presences of the proteins were ascertained under the laser confocal microscope (Nikon, Tokyo, Japan).
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6

Quantitative Analysis of Antioxidant Proteins

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Lung tissues were homogenized in RIPA buffer (R0278, Sigma, USA) with protease cocktail inhibitor (P8340, Sigma, USA). An aliquot of protein (~ 60 µg) was separated, blotted on to the PVDF membrane, and probed with Nrf2 (16396-1-AP, lot # 00043875, 1:2500 dilution), Nqo1 (11451-1-AP, lot # 00051701, 1:2500 dilution), Gclm (14241-1-AP, lot 00005573, 1:2500 dilution) (obtained from Proteintech, Chicago, IL), Hmox1 (SC-10789, lot # H1415, 1:2500 dilution, Santa Cruz Inc, Santa Cruz, CA) or β-actin (A5441, Lot # 014M4759, Sigma) antibodies. Immunoblots were developed using the HyGlo ECL kit (E2400, Denville Scientific Inc, NJ) and visualized by Bio-Rad Gel Doc system and bands were quantified using ImageJ software. β-actin band values were used to normalize and calculate relative band intensities of target genes.
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7

Immunohistochemical Analysis of Oxidative Stress

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Tissue specimens from human or mouse were fixed with 4% paraformaldehyde, embedded in paraffin, sectioned with 6-μm thickness, and immunostained with specific antibodies, including SND1 (10,760–1-AP, Proteintech), Nrf2 (16,396–1-AP, Proteintech), GPX4 (67,763–1-Ig, Proteintech), and 4-HNE (R&D systems, MAB3249). The histological slides were observed under a light microscope (Leica, Germany). The percentage of positive cells was calculated.
TUNEL staining was performed with In Situ Cell Death Detection Kit, POD (Roche, Switzerland) according to the manufacturer’s protocol. Images were acquired with an Olympus FSX100 microscope (Olympus, Tokyo, Japan).
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8

Quantifying Liver Protein Expression

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Target proteins in liver samples and cell extracts were quantified using Western blotting. In a nutshell, 40 μg of total protein from each sample was utilized for western blot analysis, which was carried out using a standard methodology.The following antibodies were used: β-actin (66009-1-Ig; 1:1000; ProteintTech Group, Chicago, IL, USA), GPX4 (59735; 1:1000; Cell Signaling Technology), COX2 (12282; 1:1000; Cell Signaling Technology), NRF2 (16396-1-AP; 1:800; ProteinTech Group), SLC7A11 (26864-1-AP; 1:1000; ProteinTech Group), and HO-1 (86806; 1:1000; Cell Signaling Technology). The Tanon-5200 Chemiluminescent Imaging System was used to collect the data, and ImageJ (NIH, Bethesda, MD, USA) was used to perform densitometric analysis of the immunoblotting bands.
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9

Molecular Signaling Pathway Analysis

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Ultra-High-Performance Liquid Chromatography (Dionex, USA); High-speed refrigerated centrifuge (Eppendorf, Germany); GAPDH (GB15002), Caspase3 (GB11009-1), Hes1 (GB11374), CyclinD1 (GB111935), CyclinE1 (GB111938), BCL-2 (GB113375), Jagged (GB11122), Notch1 (GB111690), horseradish peroxidase (HRP) conjugated goat anti-mouse (GB25301) and goat anti-rabbit (GB23303), and Bax (GB12690) were purchased from Wuhan servicebio Technology CO., LTD. MCUR1 (13706, CST), HO-1 (25614-1-AP) and Nrf2 (16396-1-ap) were ordered from Proteintech, Wuhan.
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10

Ferulic Acid Modulates Nrf2/Keap1/HO-1 and NF-κB Signaling

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Ferulic acid (FA, purity ≥ 98 %) was obtained from Dalian Meilun Biotechnology (Dalian, China). Acetic, propionic, butyric, isobutyric, isovaleric, and valeric acid standards were provided by the Sigma-Aldrich Chemical Co. Ltd (St. Louis, MO, USA).
The antibodies of Nuclear factor E2-related factor 2 (Nrf2,16396-1-AP), Kelch-like ECH-associated protein 1(Keap1,10503-2-AP), Heme oxygenase-1(HO-1,10701-1-AP), and Nuclear factor kappa B p65 (NF-κB p65,10745-1-AP) were purchased from Proteintech (Wuhan, China). p38 MAPK (A0227), Phospho-p38 MAPK (P-p38, AP0057), Phospho-Nuclear factor kappa B p65 (P-p65, AP0446) were purchased from ABclonal (Wuhan, China). The β-actin (GB11001) was the production of Servicebio (Wuhan, China).
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