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13 protocols using easysep mouse pe positive selection kit

1

Purification of Murine Immune Cells

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These lineages were purified from murine BM by positive immuno-magnetic selection:
PE anti-mouse TCR β antibody (clone H57-597) (Biolegend) and EasySep Mouse PE Positive Selection Kit (StemCell Technologies) for T cells, PE anti-mouse CD19 antibody (clone 6D5) (Biolegend) and EasySep Mouse PE Positive Selection Kit (StemCell Technologies) for B cells, anti-CD11b MicroBeads (Miltenyi Biotech) for monocytes, and MojoSort Mouse CD11c Nanobeads (Biolegend) for dendritic cells.
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2

Isolation of Liver Cell Subsets

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Hepatic NPCs and hepatocytes were isolated as previously described (Shan et al., 2018 (link)). In brief, mice were anesthetized and liver tissues were perfused with EGTA solution, followed by a 0.04% collagenase digestion buffer. Liver hepatocytes and NPCs were isolated by gradient centrifugation using 35% percoll (Sigma). To further purify LSEC and Mɸs, LSEC and Mɸs fractions were stained with phycoerythrin (PE)-conjugated anti-CD146 (for LSEC, Invitrogen, 12-1469-42), and anti-F4/80 (for Mɸs, Invitrogen, 12-4801-82) antibodies and positively selected using EasySep Mouse PE Positive Selection Kit (Stemcell Technologies) following manufacturer’s instructions. Each subset will yield a purity around 90%.
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3

Enrichment and Analysis of AP Cells

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SVF cells were isolated as described above for analysis of phosphorylated AKT, and enrichment for AP cells was achieved using the EasySep Mouse PE Positive Selection Kit (Stem Cell Technologies #18554) using a Sca-1-PE antibody (eBioscience #12-5981-81) according to the manufacturer’s instructions. Positively selected cells were then lysed on ice in 1% IGEPAL with protease inhibitors (Roche) and PhosStop phosphatase inhibitors (Roche). Protein concentration for the resulting lysates was determined using the BCA (bicinchoninic acid) Protein Assay kit from Pierce, and lysates were run on 10% polyacrylamide gels from Invitrogen, followed by western blotting analysis.
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4

Purification of γδ and αβ T Cells

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WBCs and VAT SVF cells were purified from 24-month old mice (3 pools of 8 aged mice each) and 4-month old mice (3 pools of 10 mice each) for sequential magnetic separation of γδ and αβ T cells. Pools of mice were used to achieve the required starting material for magnetic separation kits. Selection of PE-labeled γδ T cells: γδ T cells were purified by positive selection for γδ TCR with anti-mouse γδ TCR antibody (STEMCELL Technologies 60104PE) and EasySep mouse PE positive selection kit with magnetic particles (STEMCELL Technologies 17666), following the manufacturer’s directions. Magnetically isolated γδ TCR positive cells were washed 5 times to obtain pure cells. Selection of FITC-labeled αβ T cells: The initial supernatant, devoid of γδ T cells and containing the remaining cells, was used to positively select for CD3 positive cells (αβT cells) with anti-mouse CD3 antibody (STEMCELL Technologies 60015FI) and EasySep mouse FITC positive selection kit (STEMCELL Technologies 17668). Magnetically isolated CD3 positive cells were washed 5 times to obtain pure cells. Purity of the fractions was assessed by flow cytometry.
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5

Isolation of Mac1+ Myeloid Cells

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Isolation of Mac1+ cells was performed with EasySep Mouse PE Positive Selection Kit (18554, STEMCELL Technologies), EasySep Magnet (18000, STEMCELL Technologies) and PE-conjugated anti-mouse CD11b (M1/70).
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6

Isolation and transplantation of Vγ4 T cells

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Vγ4 T cells were isolated from lymph node cells and splenocytes of C57BL/6 WT, Il-17a−/−, and Ifn-γ−/− mice by the EasySep positive cell isolation systems (PE labeled anti-Vγ4 Ab; BD, USA; EasySep mouse PE positive selection kit; StemCell Technologies, Canada). The purity of isolated Vγ4 T cells was identified by FACS analysis. 1 × 104 cells/wound of WT, Il-17a−/−, and Ifn-γ−/− Vγ4 T cells were placed onto the wound bed immediately following excision.
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7

Purification of Stromal Vascular Fraction Cell Subsets

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CD31 positive cells from SVF (8–13 aged mice, 2 replicates) were purified by positive selection for CD31 with anti-mouse CD31 antibody (BioLegend 102405) and EasySep mouse FITC positive selection kit (STEMCELL Technologies 17668). Magnetically isolated CD31 positive cells were washed 4 times to obtain pure cells. The initial supernatant containing the remaining cells was then used to positively select for CD34 positive cells with anti-mouse CD34 antibody (BioLegend 119307) and EasySep mouse PE positive selection kit (STEMCELL Technologies 17666). Magnetically isolated CD34 positive cells were washed 3 times to obtain pure cells. The remaining immune cells were purified from the resultant supernatant after CD34 isolation by CD45 antibody and EasySep mouse APC positive selection kit (STEMCELL Technologies, 17667). The resultant supernatant containing non-immune cells was washed 3 times by reapplying to the magnet to obtain pure cells.
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8

Isolation and Analysis of Tumor-Infiltrating Immune Cells

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Macrophages or T cells were isolated from 4T1 or EO771 tumors at the experimental end point using EasySep Mouse PE Positive Selection Kit (Stem Cell Technologies, Vancouver, BC) as previously described (29 ). For cell isolation, 1×107–1×108 cells were incubated with 20 μL PE conjugated anti-F4/80 or anti-CD3 (Biolegend) and 50 μL microbeads. The T cells and macrophages were lysed in Qiazol and used for RT-PCR analysis. For ChIP assays, 5–10×106 macrophages were fixed in 1% formaldehyde.
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9

Mononuclear Cell Isolation from Mouse Brains

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At peak of disease (approximately day 15 post-immunization), mice were perfused with 10 mL heparinized PBS via direct cardiac puncture and brains isolated. Brains from at least 10 mice were pooled and homogenized using Seward stomacher and mononuclear cells from brains isolated using a 30% percoll (GE Healthcare Life Sciences; Pittsburgh, PA) gradient. Where stated, CD4+ T cells were isolated using Stem Cell Technologies (Cambridge, MA) EasySep™ Mouse PE Positive Selection Kit and phycoerthyrin (PE)-conjugated anti-CD4 (clone: GK 1.5) (purity >90%). Where indicated, total brain mononuclear cells were cultured for 72 h in the presence of 30 μg/mL MOG. Cultures were maintained in complete RPMI 1640 media supplemented with 10% heat-inactivated fetal bovine serum, 10 mM l-glutamine, 10 mM HEPES, 50 μM β-mercaptoethanol, and 100 μg/ml penicillin/streptomycin at 37 °C and 5% CO2.
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10

Isolation and Enzymatic Analysis of Retinal Rods

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We performed retinal dissociation by incubating dissected retinas in 12 U/ml papain (Sigma, St. Louis MO) and 5 mM L-cysteine in DMEM for 30 minutes on a small vibrating aquarium pump at room temperature. After washing away residual papain with 5 exchanges to fresh DMEM, we triturated the samples with fire-polished Pasteur pipets. We then separated rod photoreceptors with the EasySEP Mouse PE Positive Selection Kit (Stem Cell Technologies, Vancouver Canada) and PE-conjugated anti-CD73 antibodies (Miltenyi Biotec, Bergisch Gladback Germany). We measured the enzymatic activity of NAD+-dependent isocitrate dehydrogenase (NAD-IDH/IDH3), alpha-ketoglutarate dehydrogenase (AGDH), and malate dehydrogenase (MDH) in these rods with assay kits from Sigma (St. Louis MO) according to the manufacturer’s instructions. We normalized enzymatic activity to total protein and/or viable rod cell number.
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