The largest database of trusted experimental protocols

14 protocols using anti smc1

1

Antibody-Based Protein Analysis Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
The following antibodies were used in this study: anti-centromere antibody (ACA or CREST-ImmunoVision, HCT-0100), anti-PP2A-Aα (Santa Cruz, Sc-6112), anti-Histone H3-pS10 (Cell signaling, 9706), anti-Smc1 (Bethyl, A300-055A), anti-SET (Bethyl, A302-261A), AKT (Cell signaling, 4691S), pAKT (S473) (Cell signaling, 4060S), anti-actin (Thermo Scientific, MA5-11869), anti-pHec1 (phospho Ser55, GTX70017, GeneTex), and anti-Myc (Millipore, 11667149001). Anti-Sororin is a gift from Susannah Rankin. Anti-Sgo1 and anti-GFP antibodies were made in-house as described previously (Liu et al., 2013b (link); Kim and Yu, 2015 (link)).
Antibody dilution for immunoblotting was often 1:1000 unless specified.
The secondary antibodies were purchased from Li-COR: IRDye 680RD goat anti-mouse IgG secondary antibody (926-68070) and goat anti-rabbit IgG secondary antibody (926-32211).
Harvested cells were collected and lysed with SDS sample buffer. After being 5-min boiled, lysates were resolved by SDS–PAGE and blotted with indicated antibodies.
For immunoprecipitation, anti-Myc or anti-GFP antibodies were coupled to Affi-Prep Protein A beads (Bio-Rad) at a concentration of 1 mg/ml−1.
+ Open protocol
+ Expand
2

Quantitative Western Blot Analysis of Telomeric Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Nuclear Cytosolic Fractionation Kit (BioVision) was used to obtain protein extracts. Protein concentration was determined using the Bio‐Rad DC Protein Assay (Bio‐Rad). Up to twenty micrograms of nuclear protein extracts was separated in SDS–polyacrylamide gels by electrophoresis. After protein transfer onto nitrocellulose membrane, the membranes were incubated with the indicated antibodies. Antibody binding was detected after incubation with a secondary antibody coupled to horseradish peroxidase using chemiluminescence with ECL detection KIT (GE Healthcare).
Primary antibodies: anti‐TRF1 1:1,000 (BED5, Bio‐Rad), anti‐TRF1 1:500 (homemade), anti‐SMC‐1 1:2,000 (Bethyl), anti‐AKT1 1:500 (Millipore), anti‐p‐AKT 1:500 (Ser473, Cell Signaling Cell Signaling Technology), anti‐S6 1:500 (Cell Signaling Cell Signaling Technology), anti‐p‐S6 1:500 (Ser240/244, Cell Signaling Technology), anti‐TIN2 1:1,000 (Abcam), anti‐RAP1 1:1,000 (Bethyl).
For the quantification, protein‐band intensities have been quantified by densitometric analysis with ImageJ software. The Trf1 total levels have been normalized versus SMC1 and the mean of the Trf1/SMC1 ratio deriving from at least 3 different replicates has been used to generate the chart.
+ Open protocol
+ Expand
3

Quantifying AMPK and ACC Activation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Lymphocytes were lysed in F buffer (1×107 cells mL−1) and subjected to immunoblot analysis as described previously [3] , [10] . Total ACC and ACCS79 were detected by bi-fluorometric analysis using the Odyssey LICOR system and ImageJ software was used for integral signal quantification. Anti-AMPKα1 and anti-ACCS79 were kindly provided by Grahame Hardie, University of Dundee, U.K. Anti-Smc1 was purchased from Bethyl Laboratories Inc and anti-Hif1α was obtained from R&D Systems. Anti-Glut1 was a gift from Geoff Holman, University of Bath, U.K. [19] , [24] (link). All other antibodies for immunoblotting were obtained from Cell Signaling Technology. Antigens were detected using suitable HRP-conjugated secondary antibodies and enhanced chemoluminescence.
+ Open protocol
+ Expand
4

Antibody Characterization Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
The following antibodies were used in this study: anti-centromere antibody (ACA; or CREST-ImmunoVision; HCT-0100), anti-Myc (Roche; 11667203001), anti-Smc1 (Bethyl; A300-055A), anti-Rpb1 (Abcam; ab5408), anti-H3K4me2 (EMD Millipore; 07–030), anti-H3K9me3 (Abcam; ab8898), anti-Actin (Invitrogen; MA5-11869), anti-CENP-B (Abcam; ab25734), anti–CENP-A (EMD Millipore; 07–574), and anti–Rpb2-pSer2 (BioLegend; H5). Anti-Sgo1, anti-Bub1, and anti-Wapl were made in-house as described previously (Liu et al., 2013a (link); Qu et al., 2019 (link)). Anti-Sororin antibodies described previously were a gift from Dr. Susannah Rankin at Oklahoma Medical Research Foundation, Oklahoma City, OK (Liu et al., 2013b (link)).
The secondary antibodies were purchased from LI-COR: Goat anti-Mouse IgG Secondary Antibody (926–68070) and Goat anti-Rabbit IgG Secondary Antibody (926–32211).
For immunoblotting, primary and secondary antibodies were used at 1-µg ml−1 concentration.
+ Open protocol
+ Expand
5

Comprehensive Antibody Panel for DNA Damage Response

Check if the same lab product or an alternative is used in the 5 most similar protocols
The following antibodies were used in this study: mouse monoclonal anti-γH2A histone family X (H2AX) [#05–636], anti-RPA32 [NA-19 L6], anti-RPA70 [NA-18] and rabbit polyclonal anti-H2B [#07–371] (Merck Millipore); rabbit polyclonal anti-FXR1 [A300-892A], anti-phospho-RPA32 [A300-246A], anti-phospho-SMC1 (S966) [A300-050A], anti-SMC1 [A300-055A], anti-RAD50 [A300-184A] and anti-phospho-KAP1 [A300-767A] (Bethyl Laboratories Inc.); rabbit polyclonal anti-phospho-Chk2 (T68) [#2661], anti-phospho-Chk1 (S317) [#2344], anti-phospho-pRad17 (S645) [#6981], anti-phospho-p38MAPK [#4511] and rabbit polyclonal anti-TOMO20 [11802–1-AP] (Proteintech); mouse monoclonal anti-p53-pS15 [#9286] (Cell Signaling Technology); rabbit polyclonal anti-NBS1 [NB100–143] and anti-MRE11 [NB100–142] (Novus Biologicals); rabbit polyclonal anti-phospho-ATM [ab8192] (Abcam); mouse monoclonal anti-KAP1 [GTX49179], anti-NBS1 [GTX70222], anti-MRE11 [GTX70212] and anti-RAD50 [GTX70282] (GeneTex); mouse monoclonal anti-beta-actin [A53169] (Sigma-Aldrich); mouse monoclonal anti-p53 [sc-126] and anti-ATM [sc-23992] (Santa Cruz); mouse polyclonal anti-RAD51 [70–001] (Bioacademia); and mouse monoclonal anti-GST [27–4577-01] (GE Healthcare).
+ Open protocol
+ Expand
6

Western Blot Analysis of Telomere Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total protein extracts were obtained using RIPA extraction buffer and protein concentration was determined using the Bio-Rad DC Protein Assay (Bio-Rad). Up to 20 micrograms of protein per extract were separated in SDS–polyacrylamide gels by electrophoresis. After protein transfer onto nitrocellulose membrane (Whatman), the membranes were incubated with the indicated antibodies. Antibody binding was detected after incubation with a secondary antibody coupled to horseradish peroxidase using chemiluminescence with ECL detection KIT (GE Healthcare). Primary antibodies: anti-TRF1 (BED5, Cell Signaling), anti-RAP1 (Bethyl), anti-SMC-1 (Bethyl). Quantifications: Protein-band intensities were measured with ImageJ software and normalized against the loading control.
+ Open protocol
+ Expand
7

Generation and Characterization of Cohesin Antibodies

Check if the same lab product or an alternative is used in the 5 most similar protocols
The anti-WAPL and anti-SORORIN antibodies were generated against human WAPL601–1190 and SORORIN91–252, respectively. The following antibodies were purchased from the indicated commercial sources: anti-Myc (Roche, 11667203001), anti-SCC1 (Bethyl Laboratories, A300-080A), anti-SMC1 (Bethyl Laboratories, A300-055A), anti-SMC3 (Bethyl Laboratories, A300-060A), and anti-PDS5A (Bethyl Laboratories, A300-089A).
+ Open protocol
+ Expand
8

Protein Extraction and Western Blot Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein extracts were obtained using Nuclear Cytosolic Fractionation Kit (Biovision) or RIPA extraction buffer and protein concentration was determined using the Bio-Rad DC Protein Assay (Bio-Rad). Up to 20 μg of protein per extract were separated in SDS–polyacrylamide gels by electrophoresis. After protein transfer onto nitrocellulose membrane (Whatman), the membranes were incubated with the following primary antibodies: anti-S6 ribosomal protein (1:1000; Cell Signaling Technology, Cat#2217), anti-phospho-S6 ribosomal protein (Ser 240/244) (1:1000; Cell Signaling Technology, Cat#2215), anti LC3 (1:500; Cell Signaling Technology, Cat#2775), anti-β-actin (Sigma), anti-SMC1 (1:2000; Bethyl), anti-total OXPHOS (1:500; Total OXPHOS Rodent WB Antibody Cocktail, Cell Signaling Technology, Cat#110413). Antibody binding was detected after incubation with a secondary antibody coupled to horseradish peroxidase using chemiluminescence with ECL detection KIT (GE Healthcare). Protein-band intensities were measured with ImageJ software.
+ Open protocol
+ Expand
9

BRCA2 Modulation of ERK Signaling in Cell Lines

Check if the same lab product or an alternative is used in the 5 most similar protocols
Human HEK293T and MDA-MB-231 cells, as well as BRCA2-mutated V-C8 hamster cells transduced with empty vector or wild type BRCA2 were seeded at 2500 cells per well in 96-well plates and grown in monolayers in DMEM medium (Sigma Aldrich) supplemented with 10% foetal bovine serum (Life Technologies), penicillin and streptomycin (Sigma Aldrich). ERK1/2 inhibitors SCH772984 and VTX-11e were added at the indicated concentrations ranging between 0.3-10 mM. Cell number was determined by incubating cells with media containing 10 mg/mL of resazurin for 2 hours. Fluorescence was measured at 590 nm using a plate reader (POLARstar, Omega one). Cells exposed to the indicated treatments were collected at the indicated timepoints and immunoblotted with the following antibodies: anti-BRCA2 (Calbiochem), anti-SMC1 (Bethyl Laboratories), anti-pERK (Cell Signaling Technology) and sheep polyclonal antibody raised against mouse BRCA2.
+ Open protocol
+ Expand
10

Protein Extraction and Western Blot Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total cell and nuclear protein extracts were obtained by RIPA extraction buffer MERK, R0278) or using a Nuclear/Cytosolic Fractionation Kit (Biovision, K266-100) and protein concentration was determined using a Bradford Reagent (B6916, Sigma Aldrich). Forty micrograms of nuclear extracts were separated in 4–12% SDS-PAGE gels (NuPAGE Invitrogen) and transferred to nitrocellulose membranes (Amersham Protan). Blots were incubated with the indicated antibodies. Antibody binding was detected after incubation with a secondary antibody coupled to horseradish peroxidase using a chemiluminescence with ECL detection kit (GE Healthcare). The primary antibodies used were rat monoclonal anti-POT1a (1:200, Clone name POP148C, CNIO homemade), rat monoclonal anti-TRF1 (1:500, Clone name 572C, CNIO homemade), rabbit polyclonal anti-nanog (1:1000, Cell Signaling, 8822), rabbit polyclonal antiphospho-CHK1 (Ser345) (1:1000, Cell Signaling, 2348), mouse monoclonal anti-CHK1 (1:1000, Cell Signaling, 2360), rabbit polyclonal anti-phosphoRPA32 (1:1000, Bethyl), A300-245A), rat monoclonal anti-RPA32 (1:1000, Cell Signalling, 2208) and rabbit polyclonal anti-SMC1 (1:8000; Bethyl, A300-055A).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!